Plant FIBer expression Database

Lus10040978 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G46170 42 / 4e-05 F-box family protein (.1)
AT4G18380 41 / 6e-05 F-box family protein (.1.2)
AT1G30200 40 / 0.0002 F-box family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013431
[exp]
133 / 1e-39 AT4G18380 102 / 4e-25 F-box family protein (.1.2)
Lus10038511
[exp]
43 / 2e-05 AT5G46170 453 / 5e-161 F-box family protein (.1)
Lus10023298
[exp]
41 / 0.0001 AT5G46170 505 / 4e-179 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G047600
[exp]
75 / 7e-17 AT4G18380 197 / 4e-60 F-box family protein (.1.2)
Potri.011G082900
[exp]
44 / 9e-06 AT5G46170 488 / 9e-173 F-box family protein (.1)
Potri.004G065900
[exp]
42 / 2e-05 AT5G46170 499 / 3e-177 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Lus10040978 pacid=23179664 polypeptide=Lus10040978 locus=Lus10040978.g ID=Lus10040978.BGIv1.0 annot-version=v1.0
ATGGGAACACACCAGATTCGTGAATTGAGAACAAACATTAATGGCAACGATGATGATAGTAATAACGTTAACAATAATTCTGCAGAGGGAAATGGGGGAA
GAATTACTGTCCCAGATTTGAGGGTGAGGCTGTGGTACTTGCCGGTGATGGAGCTGAAGGGAACTGGGTATTCAATGGAAGGGGCAACACTAATTCACAT
CCGACCTGCTACTGCGGCGGCGGAGGACGAGGGAGGGACATTATGGGAGAGGAATGATGGAGAGGATTTGCTTGGTCTGCGTGTTGACGGAGAGGAGATT
TCTGAAGAGGACAAGGCATGGCTGGAAGCTGCCAGAGAGTTTATCAATATGAAGGAAAGCTATATCATCAACATCAGCTCCTTCTGA
AA sequence
>Lus10040978 pacid=23179664 polypeptide=Lus10040978 locus=Lus10040978.g ID=Lus10040978.BGIv1.0 annot-version=v1.0
MGTHQIRELRTNINGNDDDSNNVNNNSAEGNGGRITVPDLRVRLWYLPVMELKGTGYSMEGATLIHIRPATAAAEDEGGTLWERNDGEDLLGLRVDGEEI
SEEDKAWLEAAREFINMKESYIINISSF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G18380 F-box family protein (.1.2) Lus10040978
[exp]
0 1
AT5G10530 Concanavalin A-like lectin pro... Lus10033781
[exp]
1.7 0.9687
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Lus10040936
[exp]
6.3 0.9598
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Lus10042561
[exp]
10.6 0.9409
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Lus10037585
[exp]
15.0 0.9497
AT1G20030 Pathogenesis-related thaumatin... Lus10004410
[exp]
15.7 0.9261
AT1G47670 Transmembrane amino acid trans... Lus10022641
[exp]
18.1 0.9591
AT3G23230 AP2_ERF ERF98 Integrase-type DNA-binding sup... Lus10021196
[exp]
19.8 0.9241
Lus10016839
[exp]
20.8 0.9555
AT4G35030 Protein kinase superfamily pro... Lus10017273
[exp]
21.0 0.9464
AT1G16130 WAKL2 wall associated kinase-like 2 ... Lus10003063
[exp]
22.3 0.9304

Lus10040978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.