Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08200 256 / 2e-82 peptidoglycan-binding LysM domain-containing protein (.1) AT5G23130 251 / 2e-80 Peptidoglycan-binding LysM domain-containing protein (.1) AT1G55000 45 / 2e-05 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013432 [exp] 642 / 0 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1) Lus10010198 [exp] 409 / 6e-141 AT5G08200 277 / 9e-89 peptidoglycan-binding LysM domain-containing protein (.1) Lus10017399 [exp] 327 / 7e-112 AT5G08200 227 / 4e-72 peptidoglycan-binding LysM domain-containing protein (.1) Lus10004477 [exp] 48 / 4e-06 AT1G55000 327 / 5e-114 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10029925 [exp] 47 / 8e-06 AT1G55000 320 / 1e-111 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071500 [exp] 278 / 1e-90 AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G092800 [exp] 273 / 7e-89 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.012G036600 [exp] 214 / 1e-66 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.013G021600 [exp] 45 / 5e-05 AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.005G032100 [exp] 41 / 0.0003 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040979 pacid=23179603 polypeptide=Lus10040979 locus=Lus10040979.g ID=Lus10040979.BGIv1.0 annot-version=v1.0 ATGATGGGTCATTGTAGTCATAGATACAGTCTTTTTGCAAATGATTACGAGAGGCAGCAGCTCAACTCCGACGATTTAGGTTTTGATTTTTACAATCAGA GTTTTCTCAACGAAAATGGAAACGGGAATGAAAATGGGAATGCATCCACCAACTCCTCGCCGACGACCTCGCCGGTATCCCGCCGTGGCTTCATTGAGCA CTCGGTTTCTAAGTTCGATACCCTCGCCGGCGTTGCCATCAAGTATGGCGTTGAGGTGGCCGACATCAAAAAGAAGAATGGCCTGGTTACAGATCACCAA ATGTTTGCCCTGAAGACGCTCCAGATTCCTCTACCTGGGAGACATCCCCCATCACCATCTCTATCAAATGGTTCTGAGACCACATGTGAGAGCAACTCTG AGCATACCCCACTCCAGCGTAGATATTCCGATCTCTTTGATTCATTCCAAACCTTGAGGCCAAAGTCATCTTCTGGGCGCAAGGTGTCTTCCGCGATGAG CTCTTTACAGGGTTACTATGGGCTTAGTGCAGGTGATCCAAGCAAAAGCTTGAGACTTTCTCCAGACTCCAACCCTCCTCTAACCCATCAACGGAAATCC AGGAGCTATGTGAATGTTCTTCTTGACGAGAATAATGGGCGAGATGGTGCTGATAGTGATTCTATGGTAAGAAGGCGTCAGAAATCTGAAGCTGACTTCC CAAACATGCTCAAGAGTGAAGAGAATAATAGCAATGGGGTCGGGGTATCAGCAGGGATAACCGGGAAGCGGTTGGCTTTAAGAACCAAAGCAACAAACCG CAGCGGGTTGCTCTCAGATTTTGAGACCGTAAACGGTTTGAGCCCTAAACAAGCTGCTACGGTCGATTCTGATGTGGTTGACCCGATTTCTGCCGCAGCA GTGAGGAAGTCGTCGAGCACATCGAGCCTGAACGACACTGACTGCAGTGGTTCCTTTGCATGGCCATCGCCGAAATGGAGTCAGGCACTATCAGCAGCAG CCATTGCTAGGCCTATCTTTGATGGGTTGCCTAAGCCATTGAGTGGGTGGAGAAACAAAGCAGCTGTCGACTAG
AA sequence Show only first row Show all	>Lus10040979 pacid=23179603 polypeptide=Lus10040979 locus=Lus10040979.g ID=Lus10040979.BGIv1.0 annot-version=v1.0 MMGHCSHRYSLFANDYERQQLNSDDLGFDFYNQSFLNENGNGNENGNASTNSSPTTSPVSRRGFIEHSVSKFDTLAGVAIKYGVEVADIKKKNGLVTDHQ MFALKTLQIPLPGRHPPSPSLSNGSETTCESNSEHTPLQRRYSDLFDSFQTLRPKSSSGRKVSSAMSSLQGYYGLSAGDPSKSLRLSPDSNPPLTHQRKS RSYVNVLLDENNGRDGADSDSMVRRRQKSEADFPNMLKSEENNSNGVGVSAGITGKRLALRTKATNRSGLLSDFETVNGLSPKQAATVDSDVVDPISAAA VRKSSSTSSLNDTDCSGSFAWPSPKWSQALSAAAIARPIFDGLPKPLSGWRNKAAVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	3.0	0.8577
AT1G76270			O-fucosyltransferase family pr...		Lus10013234 [exp]	3.7	0.8157
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	5.2	0.8413
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	6.3	0.8478
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	6.3	0.8240
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	8.9	0.8046
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	13.0	0.7913
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	14.4	0.7960
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	15.9	0.8015
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	23.0	0.8233

Compare expression of checked genes

Lus10040979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.