Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23150 431 / 1e-127 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 359 / 2e-102 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 213 / 9e-56 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 201 / 8e-52 Tudor/PWWP/MBT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013433 [exp] 1863 / 0 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 937 / 0 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 932 / 0 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 196 / 1e-50 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10042690 [exp] 146 / 7e-35 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1) Lus10032141 [exp] 48 / 7e-05 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 47 / 0.0001 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092700 [exp] 667 / 0 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 629 / 0 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.014G138700 [exp] 223 / 8e-59 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 46 / 0.0002 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10040980 pacid=23179799 polypeptide=Lus10040980 locus=Lus10040980.g ID=Lus10040980.BGIv1.0 annot-version=v1.0 ATGGCTCCTGGGCGTAAAAGGGGAGCAAACAAGGCCAAAGCCAAGAGTCAGCTCAGTTTGGGCGACCTTGTTCTTGCTAAAGTTAAAGGCTTCCCTTATT GGCCTGCCAAGATATGTCCGCCAGAAGACTGGGAGAAGGTACCGGACCCTAAGAAACATTTCGTTTACTTCTTTGGTACTCAAGAAATAGCTTTCGTTGC TCCTTCTGATATCCAAGTATTCACAAATGAAACAAAGAACAAGCTATGTTCTAAGAGTCAAGGTAAGAATAATAGCTTTTCTCAAGCAGTAAAGGAAATA TGTGCCGAATTCGAGAAGTCACAGAATGATAAGTCAAGTGTGCTCGGTGAGGCGCCCTCCGCTGATGGAACAGAAGATAGAGGTGATGTTAGATACAAGT CAGATAATTGCTCTAGACAGAAGGGTGAGGCTGACTGTGAAGATACAAAGCCTGTCGAGTCATGTGATGCTAGAGACAGTCCAGTCCAGGCTACATCTTT TGACAAGAAATCTGATGATGCTCAGCTGCAGGATATGGTAGCTTGTCCTGGGATCTCCAAGGATGGGAAGGATGAAACTTCTAGTGTTGGTGGAAAGCAG GAGGTGGACGTTAGCCAGAATGGTAATAAATCCGAGATTGATATTGGTCGAGTTAGGAAGATAGATGATGCAGCAGAAGGGCATAGAAGCATGAGCTCAG ATATGATGGAAATGGAAGACATGAAATCTGGTGTTTCATCACGTAAGAAGAAGCAGTTGAAAGACAAAGGGAAAGGAAAAACTGCTTCTGCTGCAATTGA TGATGGGAAGAAAGGAAAGGAGATGCAAAAAGCTAAAAGAAATTCAAAGGCAGCTGATGGAATCTGTGAAAGCCTAGTTGATAAAAAGAATAAGGGTATT AAATCTGGATCTGGGAAGTCCAAAGTTGACACAACTAAGACTTCTCCGGCGAAAAAAACAAAGCCCGGTGATGTGGAATCCCCTGAAGAATCTCTAAACA ATGCAAACGAAAGTACTTCTGCTGAAACAGGAAAAGATAAGTTTCACGCTTTACCCGCATCAAGTAAAGTAAAATTGGAGGCATCTTCGTCAACAGCTAT GGAAAAATCTTCTGCATCAGTGCAGACTAATAAAGTCAAATCTCATGCGTCTCGCCAGATGGATAAAGTTAAATCTAGTTCTTCTAAACCCATCAATAAA CTTAAGTCAGATTCCTCTGCTCAGATGAAGAAGGTTACAGCTGGTACAGGTGAAGGAAAAATGGATGTTAAACAAACAAATAAGGTACACGATGCTTCTG GTGAGGAGGATGTGTTGCCAGTGCCGAAACGTCGTCGACGAGCAATCGAGGCAATGACTGATTCTGGCCATAATTCAAATGATCAAAGGGAAAAGAGTCC TGATACGAAGAATGACTTTGCTTCTAATAACTCTAAAGTTCATGCTAATTTGAAAAGGCGAAGGGCTGTGTGCCTCTATGACGAGGATGAAGAGGATGAA GAACCTAAAACACCAGTTCATGGGGGGTCTGCCAAAAGTGTTAAACCTCCACCTGCTGTCTCTGCTGCTTCCAAGAACAGGGATCCACAAGATGGATCTG CAGCAAACTCTCAGTCAAAAGCGAGGGAATCTACTAGACACCGTGCCAGTTTGAAGGAGGCATCCTTTCACTCCCAAAAGAATTTGCTTTCCCCTGAGGC CCCAAATGTGAAGACTCCCAGTGCTCCTGTTTCACAGAGTCCAAGAGTGGAGGAAGCACAGGTACTAGCCAAAGAGACAACAACTGTCTTGACATCTCCG AAGAACTCTCCTCGGCCACTTGCTCCTCCAAAAACAGTCGTGGAGAAACATAAAACAGGTAACAATTCTGTAAAGACATCTTCTGGTGCTCAAAAGAACT CCCAGGCTTCTTCTAATAAGCCCTCAGGCTTAGTTCTGGATGGTGGAAAAGCTTCCCTGAGTCATGTGGCAGTTCAAAGTAACAGACTATCACTTTCGAC AGAGAGACCTAAAAGTACCCCCAAAGTGTCTTCAACTGTGAGCAATCACGCCATGTTGCTGGAGACTCAGATGGATATTGAAGCTGCTGCAGATGATGCA AGCTATTCATTGGTTGATTTTAAGACTCCAGATTCTTCTGTATCTTTGAAGCACCTTATTGCTGCCGCACAAGCAAAAAGAAAAGAAGCTCATTCCCAAC ATTTCTCTCTCAGAAGCTCCAGTTACGCTCTTCTGTCCATCAATGATTCTCATGGATGGACTCCTAGTCCGACCTTTGTTCATCCTTTGCCATCTAGCAT TTCAAATGTAACGCAAGCCGATGCATCAGGGCTCCATCCTCACCCGGAAGTTGCTTCTCCGTCTACTCAGAATCATCCTTCAGACTCACAGAATCAAACG GAAAGTGGAGAGGCTGAAGAACGGAGGGTTAGTTCTGGACATAGAGCTCCTGGAGACTCACTGAGTGGTGGCACGGAAGCTGCTGTTACACGTGATGCTT TTGAAGGGATGATAGAGACTTTGTCTAGAACAAAAGAAAGTATAGCACGTGCAACTCGTCTTGCCATAGACTGTGCAAAGTATGGAATTGCGAATGAGGT TGTGGAACTTCTAGTCAGGAAGCTTGAAAGTGAACCCAGATCTCATCGGAAAGTGGACCTATTCTTTCTTGTTGACTCAATTACCCAGTGTTCGCATAAC CAGAAAGGCATAGCTGGTGCGTCATATGTACCAACAGTTCAGGCAGCATTACCACGTCTTCTGAGTGCTGCTGCTCCACCTGGAACGGGTGCTCGTGAGA ATCGCCGTCAATGTCTCAAGGTGCTAAGGCTATGGCTTGAGCGGAAAATCTTTCCTGAATCTGCATTGAAGCGTTTTATGGATGATATTGGGGGTCCTAG TGATGAAATTTCTTATGGAGTATCCCATAAGCGTCCATCCCGGTCTGAGCGGTCTTTAGATGACCCTATCAGAGAAATGGAAGGGATGCATGTGGACGAG TATGGAAGTAATGCAACGTTTCAGTTACCTGGCTTACTATCGGGGAACATTTTTGAAGATGATGAAGATTTTATAACCGAGTTAGCGAAGGAAACTGGCG AGTTGTTGATAGTGGCAGAGCCTGATGGCGCCTTAGAAGATTTGGAAACATGTGCTACTCCCAGTGATAGACGTCATTGCATCTTAGAGGATGTTGATGG TGAGCTTGAGATGGAAGATGTATCAGGTCATCATCTTAAAAATGATGAACCTCAAGCGATTGTTGAAGAGCATTGCTCCAACAGGGAGTTTGAACCTGCA TCAAACAGTTCCGCTGACTCCCCCCCACTTCCAGATGGTTCGCCACCACTGCCACCTGGTTCTCCTCCTCAGCTTCCACCTTTACCGCCCACTTCACTAC CTCCATTGCCTCCACCGCCAAGCTTCCCTTCTCAGCTTCCACCCCCGCCACCACCCCCACCCTTGCCTCCACCTCCACCACCACATATTCCTTCGCAGCT CCCTCCTACATTACCCTCAGGTCCTCATCCATCTTTGTTGCATCAACATACGCCACCAACTCAACCCTCCCTACACACTCAGTCTCTGCAGTCACCACAA TTGGGATATCAGCAGGTTGTGCCTCATGAATATTGTAGTAAAGCTAGTGGCAATCAAATGGGCCCAATGGCTAATGCTCCTCATGTGAAGCATCAGCAGT CTCCTTGTTTTCCACCTTCAGCAGTATGTAACTCCCGGGAAACTCCAGGATTCAACGCTTCCAGGCATTTGGACTATAGTCATAATGACATGTATATGAA TCCGCAAGCATCACAACACAATCCTCAGTTTCAGCAGGGTAACGCACCATTTTTACCCAGACCTCTAAATACAAACCATCTACAAGCACCTCCGGGTCAT TTTCAGTTCCCAAAGCCGATGATTCAGCAGCATCACCAGCAATCTTATCCCCATCCATATCCTGTGCCGTTGCATCCTGAGGGACATAGGCGATTTGTTG GTGACGATCAGTGGAGAATGCCCTTGAATGAGTTCAATGCTAATAATCCACATGGTGGATGGAATAGTGGAAGAATGCCGTCAAATGCGGGGCATTTGAT TGGCCAAGAAGGTTTCTTTCGTCCACCAATTGAAAGGCCTTCAGCAAATACTGTTGGTGTTCAATACCCTGCAAATAACAATTTACCCGGTGCCCCTCCA ATTCCAGATTACGTTGCTGCAGGCCCTGGTGTTTCTCCAATGATTCCATGTAGACCTGAAGTGCCCGCGGCAAACTGCTGGAGGCCAGCTTAA
AA sequence Show only first row Show all	>Lus10040980 pacid=23179799 polypeptide=Lus10040980 locus=Lus10040980.g ID=Lus10040980.BGIv1.0 annot-version=v1.0 MAPGRKRGANKAKAKSQLSLGDLVLAKVKGFPYWPAKICPPEDWEKVPDPKKHFVYFFGTQEIAFVAPSDIQVFTNETKNKLCSKSQGKNNSFSQAVKEI CAEFEKSQNDKSSVLGEAPSADGTEDRGDVRYKSDNCSRQKGEADCEDTKPVESCDARDSPVQATSFDKKSDDAQLQDMVACPGISKDGKDETSSVGGKQ EVDVSQNGNKSEIDIGRVRKIDDAAEGHRSMSSDMMEMEDMKSGVSSRKKKQLKDKGKGKTASAAIDDGKKGKEMQKAKRNSKAADGICESLVDKKNKGI KSGSGKSKVDTTKTSPAKKTKPGDVESPEESLNNANESTSAETGKDKFHALPASSKVKLEASSSTAMEKSSASVQTNKVKSHASRQMDKVKSSSSKPINK LKSDSSAQMKKVTAGTGEGKMDVKQTNKVHDASGEEDVLPVPKRRRRAIEAMTDSGHNSNDQREKSPDTKNDFASNNSKVHANLKRRRAVCLYDEDEEDE EPKTPVHGGSAKSVKPPPAVSAASKNRDPQDGSAANSQSKARESTRHRASLKEASFHSQKNLLSPEAPNVKTPSAPVSQSPRVEEAQVLAKETTTVLTSP KNSPRPLAPPKTVVEKHKTGNNSVKTSSGAQKNSQASSNKPSGLVLDGGKASLSHVAVQSNRLSLSTERPKSTPKVSSTVSNHAMLLETQMDIEAAADDA SYSLVDFKTPDSSVSLKHLIAAAQAKRKEAHSQHFSLRSSSYALLSINDSHGWTPSPTFVHPLPSSISNVTQADASGLHPHPEVASPSTQNHPSDSQNQT ESGEAEERRVSSGHRAPGDSLSGGTEAAVTRDAFEGMIETLSRTKESIARATRLAIDCAKYGIANEVVELLVRKLESEPRSHRKVDLFFLVDSITQCSHN QKGIAGASYVPTVQAALPRLLSAAAPPGTGARENRRQCLKVLRLWLERKIFPESALKRFMDDIGGPSDEISYGVSHKRPSRSERSLDDPIREMEGMHVDE YGSNATFQLPGLLSGNIFEDDEDFITELAKETGELLIVAEPDGALEDLETCATPSDRRHCILEDVDGELEMEDVSGHHLKNDEPQAIVEEHCSNREFEPA SNSSADSPPLPDGSPPLPPGSPPQLPPLPPTSLPPLPPPPSFPSQLPPPPPPPPLPPPPPPHIPSQLPPTLPSGPHPSLLHQHTPPTQPSLHTQSLQSPQ LGYQQVVPHEYCSKASGNQMGPMANAPHVKHQQSPCFPPSAVCNSRETPGFNASRHLDYSHNDMYMNPQASQHNPQFQQGNAPFLPRPLNTNHLQAPPGH FQFPKPMIQQHHQQSYPHPYPVPLHPEGHRRFVGDDQWRMPLNEFNANNPHGGWNSGRMPSNAGHLIGQEGFFRPPIERPSANTVGVQYPANNNLPGAPP IPDYVAAGPGVSPMIPCRPEVPAANCWRPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	1.0	0.9843
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	6.6	0.9553
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	8.1	0.9543
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	8.5	0.9454
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	8.7	0.9500
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Lus10019120 [exp]	9.9	0.9127
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	10.1	0.9325
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10028662 [exp]	11.0	0.9343
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	11.4	0.9404
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	11.5	0.9504

Compare expression of checked genes

Lus10040980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.