Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08240 78 / 2e-16 unknown protein AT5G23160 73 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013437 [exp] 346 / 1e-119 AT5G23160 82 / 5e-18 unknown protein Lus10010194 [exp] 130 / 1e-34 AT5G23160 90 / 3e-20 unknown protein Lus10017395 [exp] 111 / 6e-29 AT5G23160 83 / 6e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071900 [exp] 73 / 2e-14 AT5G08240 92 / 2e-21 unknown protein Potri.005G092400 [exp] 71 / 1e-13 AT5G08240 100 / 9e-25 unknown protein Potri.013G149300 [exp] 57 / 6e-09 AT5G23160 56 / 5e-09 unknown protein Potri.001G408900 [exp] 53 / 8e-08 AT5G08240 52 / 1e-07 unknown protein Potri.019G119000 [exp] 45 / 2e-05 AT5G08240 52 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040984 pacid=23179589 polypeptide=Lus10040984 locus=Lus10040984.g ID=Lus10040984.BGIv1.0 annot-version=v1.0 ATGGACTCCCACACCAACAATCCCGATCTTTCAACCAAACCCAGCAAACCCTTCTCCGCCTGCTGTTTTCGACCAACAGTAATCGAAGACGTGCCTCCAG CTAGCCATCATCAAAGCCCAATCGGGGTGGGGGAAAAGAAGAAGAAGCGGTGGTTTCCTAATTTGTCGATGAAAAAGCCGCCATCTGTCACCGCCGCTAC CAAAACTTTCCCACTCGACTCCTACTCTCTGGCGGAGGAAACCAATGGCAGTGATGATAACAACAGTGCAAAAGAATGTGATCACAACAAGTCAAAGTTC AACCGGTGGAAAGCTAACTGTATCGTCTCCTCCAGGAGAAGGCAGACTCCGGATGAGACTACCGGTATCAGTACGGAATCACCGGAAAACAAAAACACCG CGACCGCCGGGAAATGCGGGGCTTCTGAGGATCGTGGTGACGTCGTCACATGTAAAAAGCGGTTGTTCTTTCGCAGGAAAAAGTCCGAGACGACAAATGG AGACAAAAATAAGAGCAGCGGGTCATGTAGTAGGTCCCACCCGAATTCCCTGGTATCCACGTCGAATTCAAAGGTTCTAAACGCCAGCGTTTTGGCTCCC CGGCCCACCGTGGCGACGGAACTTGATGATGAGAGAATTGAACCACTAACGGCCCCGAATAATGACAAGGAGAAGGAAGAGAGGAAGTTGGGGTCGTCGG TGGTGGGGATGTCGATGATTGTGGTGACGTTGGTGATCATGGTGGTGTGGGGTCGATTTTGTGCCATTGTTTGGACGTCAGCATGGTTGTATTTGGTTCC GCGTTTGAGAACATTCCTGTCTGAGGTGCAGGCCAACGCTAACCGTGGCAAGAATAATAGCATTGCTGCTGCGGAAAGACTAGAGGAGTGCGAATTAGGT GGTTCGAGTCCGGATTTGGATTCAGCGGAATACAAGAGAAGAGTTGTGTTGGAAGGATTCCTTGAAAGAAATCGTCGTCTCAGTACTGCTTGA
AA sequence Show only first row Show all	>Lus10040984 pacid=23179589 polypeptide=Lus10040984 locus=Lus10040984.g ID=Lus10040984.BGIv1.0 annot-version=v1.0 MDSHTNNPDLSTKPSKPFSACCFRPTVIEDVPPASHHQSPIGVGEKKKKRWFPNLSMKKPPSVTAATKTFPLDSYSLAEETNGSDDNNSAKECDHNKSKF NRWKANCIVSSRRRQTPDETTGISTESPENKNTATAGKCGASEDRGDVVTCKKRLFFRRKKSETTNGDKNKSSGSCSRSHPNSLVSTSNSKVLNASVLAP RPTVATELDDERIEPLTAPNNDKEKEERKLGSSVVGMSMIVVTLVIMVVWGRFCAIVWTSAWLYLVPRLRTFLSEVQANANRGKNNSIAAAERLEECELG GSSPDLDSAEYKRRVVLEGFLERNRRLSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08240			unknown protein		Lus10040984 [exp]	0	1
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	7.5	0.9441
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	9.2	0.9343
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	21.3	0.9331
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	23.1	0.9314
AT2G14095			unknown protein		Lus10012704 [exp]	25.0	0.9221
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	27.7	0.9285
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	28.6	0.9272
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	28.6	0.9296
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10034217 [exp]	29.7	0.8821
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	31.1	0.9305

Compare expression of checked genes

Lus10040984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.