Plant FIBer expression Database

Lus10040985 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17330 321 / 4e-112 Metal-dependent phosphohydrolase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G072000
[exp]
317 / 8e-111 AT1G17330 341 / 2e-120 Metal-dependent phosphohydrolase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
Representative CDS sequence
>Lus10040985 pacid=23179947 polypeptide=Lus10040985 locus=Lus10040985.g ID=Lus10040985.BGIv1.0 annot-version=v1.0
ATGGGGACATGGGCGGAGACGGTGAAGAAGGCGGAGCAGCTCGTAGAAACTACAATGAAAGATAACGATGCTTCCCATGACGCATCCCATGTCTGGAGGG
TTAGGAACCTAGCCCTCTCTTTGGCTTCCGAAGAAGGCCTCTCTTCCCACTCCGATTCTTTGCAAATCGTAGAACTTGCTGCACTTCTCCACGATATAGG
TGACTACAAGTACTTGAGGGATACCAAAAGGGTCTCCCATTATTTGACCATGCTGGAAAACCAATACAGGGATCCAAGTGAGGCGAAAATTGTGGAGAAG
TTTCTTGAGGAAGAGGGTGTTGGCGAGATCAAGAAAGCAAAGATATTATCGATCATTAAGGGGATGGGTTTCAAAGATGAGCTTGCAGGCAGTGTGAACT
GTGTAAACTTGCCCGAGTTTGGAGTCGTCCAAGATGCTGATCGCCTTGATGCAATTGGGGCAATTGGAATTGCACGTTGCTTTACGTTTGGTGGAAGTAG
GAACAGAGTACTCCATGATCCTGCCGTTCATCCTCGGTTGGACTTATCCAAGGAACAATACGTGAAGAAAGAAGAGCAGACAACCATTAACCACTTCCAC
GAGAAGCTTCTCAAACTTAAAGACTTGATGAAAACTGAGGCTGGGAAGAGGAGGGCTGAGCGAAGGCACAAGTTCATGGACGAGTATCTGAAGCAGTTCT
ATGAGGAGTGGGATGGCCGGGCTTAA
AA sequence
>Lus10040985 pacid=23179947 polypeptide=Lus10040985 locus=Lus10040985.g ID=Lus10040985.BGIv1.0 annot-version=v1.0
MGTWAETVKKAEQLVETTMKDNDASHDASHVWRVRNLALSLASEEGLSSHSDSLQIVELAALLHDIGDYKYLRDTKRVSHYLTMLENQYRDPSEAKIVEK
FLEEEGVGEIKKAKILSIIKGMGFKDELAGSVNCVNLPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAVHPRLDLSKEQYVKKEEQTTINHFH
EKLLKLKDLMKTEAGKRRAERRHKFMDEYLKQFYEEWDGRA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G17330 Metal-dependent phosphohydrola... Lus10040985
[exp]
0 1
AT3G62140 unknown protein Lus10038035
[exp]
1.0 0.9480
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Lus10007576
[exp]
1.4 0.9315
AT3G54380 AtSAC3C yeast Sac3 homolog C, SAC3/GAN... Lus10024110
[exp]
3.5 0.9068
AT4G28830 S-adenosyl-L-methionine-depend... Lus10011107
[exp]
4.2 0.9315
AT2G39740 HESO1 HEN1 suppressor 1, Nucleotidyl... Lus10030154
[exp]
4.9 0.9269
AT3G62140 unknown protein Lus10009976
[exp]
5.3 0.9060
AT3G48340 CEP2 cysteine endopeptidase 2, Cyst... Lus10033631
[exp]
5.5 0.8956
AT2G39740 HESO1 HEN1 suppressor 1, Nucleotidyl... Lus10001012
[exp]
6.7 0.9088
AT5G15340 Pentatricopeptide repeat (PPR)... Lus10033775
[exp]
8.0 0.9016
AT2G04845 Acyl-CoA N-acyltransferases (N... Lus10012349
[exp]
8.7 0.8578

Lus10040985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.