Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23190 728 / 0 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 683 / 0 Cytochrome P450 superfamily protein (.1) AT1G13140 484 / 1e-166 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT1G24540 477 / 3e-164 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT3G26125 464 / 7e-159 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT1G13150 462 / 5e-158 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT1G01600 439 / 1e-148 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 434 / 9e-147 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT2G45970 431 / 5e-146 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 428 / 5e-145 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017394 [exp] 791 / 0 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 766 / 0 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10006232 [exp] 416 / 5e-140 AT1G24540 524 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Lus10032278 [exp] 406 / 1e-135 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10040687 [exp] 387 / 9e-129 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10014768 [exp] 404 / 1e-128 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10018217 [exp] 386 / 1e-128 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 379 / 6e-126 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 375 / 3e-124 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072100 [exp] 759 / 0 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 741 / 0 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 504 / 2e-174 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 503 / 3e-174 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.014G085800 [exp] 454 / 1e-154 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 429 / 8e-145 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 398 / 2e-133 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 392 / 3e-131 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G249700 [exp] 392 / 3e-131 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G397900 [exp] 390 / 4e-130 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040986 pacid=23180014 polypeptide=Lus10040986 locus=Lus10040986.g ID=Lus10040986.BGIv1.0 annot-version=v1.0 ATGAAGACGCTAAACTCAACCTCATTCTCCTTCTCTCCGGCGGCCACTCCGACAAGAATCCTATTCCTACGTGACATCCACCTCCTCGAACTCCTCCTCG CCGTTACCATCTTCCTCGCCATCCGTTCCTTCCGTCAACGTCGACGCTACGGCCTCACACTATGGCCCATCCTCGGCATGCTCCCTTCTCTCATCTCCGC TGCCGTCCACACCAACATCTACGACTGGATGACCTCCGTCCTCTCCCGCTGTAACGGCACTTTCCTCTTCAAAGGCCCCGCCTTAAGCAGCCTCAATTGC GTCATCACTGCCGACCCTCGCAACCTCGAGTACCTCCTCAAGACCAACTTCTCCAACTTCCCTAAAGGCCACTACTTCCGCGAAAACCTCCTCGACCTCC TCGGCCACGGCATCTTCAACGCCGACGACGATACGTGGCAGAAACAGCGTAAGACCTCTAGCATCGAGTTCCACTCCGCCAAGTTCCGCACCCTCACTTA CTCCTCCCTCTTCGAGCTCGTCCACGCCAGACTCCTCCCTGTCCTCGACCAGGTCGATGCTGCTGGTGCTAAAGCTACTCCCGGCGGCATCGACCTGCAG GACGTGCTGCTCAGGCTCACGTTCGACAACGTGTGCATGATAGCGTTTGGAGTGGACCCGGGGTGTCTGGCCCTTGGCCTGCCCGAGGTGTCGTTTGCCA GGGCGTTCGAGGACGCAACGGAGGCTACGATGCTGAGGTTCATGATGCCAACGTGTGTTTGGAAGGCGATGAGGTGGGCCGACGTGGGGCCCGAGAGGGT GCTGAGGAGGTCGATTTGGAGGGTGGACGAGTTTGCTGACGGAGTGATAAGGGCGAGGAAGAAGGAGCTGGCGTTGCTCGAAGAAGACGAGAAGAAGTCG GACATACTGACGGTGTTCATGGGGCTGAGGGACGAGAGAGGGAGGGCTTACACGGACAAGTTTCTTAGGGACATTTGTGTCAACTTCATACTGGCGGGGA GGGACACGTCGTCGGTGGCGTTGAGTTGGTTTTTCTGGTTGGTTGATGCTCACCCGGAGGTTGAGGAGAGGATTGTGGAGGAGATTTGTAAGGTTGTGAA GGAGAGATCATCAGGAGGAAACGACAACAATGACAACAAGAACAAGACTAGTTCAGGAGAAATGGTGCTGAAGCCTGAGGAGATTAAGAAGATGGAGTAT TTGCAGGCTGCTTTGTCCGAAGCATTACGCCTCTATCCTTCTGTACCCGTGGATCATAAGGAGGTTGTTGAGGATGACGTATTCCCGGACGGTACCGTTC TGAAGAAAGGAACCAAGGTGATCTACGCAATCTACGCGATGGGGAGGATGGAATCCATATGGGGAAAGGACTGCAACGAGTTCAAACCGGAGAGGTGGCT GGGGAAGGATGGCCGGTTCATGAGCGAATCTGCCTATAAGTTCACCGCTTTCAATGGCGGCCCTCGTCTGTGCTTGGGTAAGGACTTCGCTTACTACCAG ATGAAGTATGTGGCGGCTTCCATCATGTACCGATACAAGGTGAAAGTTGTGAAGGATCACCCAGTCACCCCGAAGCTCGCATTGACCATGTACATGAAAC ATGGGCTCAAGGTCAACTTGTACAGGAGGCGTACTACTGATGAACCATCATCCATCGAGCAGAAGATTGACGGTTGA
AA sequence Show only first row Show all	>Lus10040986 pacid=23180014 polypeptide=Lus10040986 locus=Lus10040986.g ID=Lus10040986.BGIv1.0 annot-version=v1.0 MKTLNSTSFSFSPAATPTRILFLRDIHLLELLLAVTIFLAIRSFRQRRRYGLTLWPILGMLPSLISAAVHTNIYDWMTSVLSRCNGTFLFKGPALSSLNC VITADPRNLEYLLKTNFSNFPKGHYFRENLLDLLGHGIFNADDDTWQKQRKTSSIEFHSAKFRTLTYSSLFELVHARLLPVLDQVDAAGAKATPGGIDLQ DVLLRLTFDNVCMIAFGVDPGCLALGLPEVSFARAFEDATEATMLRFMMPTCVWKAMRWADVGPERVLRRSIWRVDEFADGVIRARKKELALLEEDEKKS DILTVFMGLRDERGRAYTDKFLRDICVNFILAGRDTSSVALSWFFWLVDAHPEVEERIVEEICKVVKERSSGGNDNNDNKNKTSSGEMVLKPEEIKKMEY LQAALSEALRLYPSVPVDHKEVVEDDVFPDGTVLKKGTKVIYAIYAMGRMESIWGKDCNEFKPERWLGKDGRFMSESAYKFTAFNGGPRLCLGKDFAYYQ MKYVAASIMYRYKVKVVKDHPVTPKLALTMYMKHGLKVNLYRRRTTDEPSSIEQKIDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	0	1
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	2.8	0.7819
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	7.5	0.7550
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	14.7	0.7598
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	16.9	0.7982
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	26.5	0.7140
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	27.0	0.7143
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	27.7	0.7275
					Lus10029224 [exp]	30.0	0.6980
AT3G50390			Transducin/WD40 repeat-like su...		Lus10009510 [exp]	30.2	0.6596
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	31.2	0.7164

Compare expression of checked genes

Lus10040986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.