Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08280 519 / 0 HEMC hydroxymethylbilane synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013439 [exp] 723 / 0 AT5G08280 543 / 0.0 hydroxymethylbilane synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072500 [exp] 611 / 0 AT5G08280 557 / 0.0 hydroxymethylbilane synthase (.1) Potri.005G091600 [exp] 599 / 0 AT5G08280 542 / 0.0 hydroxymethylbilane synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03900 [flax] [poplar] Porphobil_deamC Porphobilinogen deaminase, C-terminal domain CL0177 [flax] [poplar] PBP PF01379 [flax] [poplar] Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain
Representative CDS sequence Show only first row Show all	>Lus10040987 pacid=23179851 polypeptide=Lus10040987 locus=Lus10040987.g ID=Lus10040987.BGIv1.0 annot-version=v1.0 ATGGAGACTCTGACTTCTCTCTGTTCCAGCCAAGCTCTTGTTTCCCACACTGCCCGCCCAATGATCTCCACGACTGGCTACTCTTGCTCTCTCAAGGGTC GAGGGTTTTCTCCCAGGACGCAGAGGATGAATGTCATTAAGGCCTCTGTCGCAGTTGAGCAGCAGACCGAGAAAACCAAGGTCGCTCTCCTCAGAATTGG CACCAGAGGAAGTTTTGATGTGCTCATTTACGGATGGCAGTATATGTACTGGTATTCTATATGCTTCAATTGGTATTTACTCTTTGCTGCTTCTCTTTTG CATCAACTACTAGAAATTCCTGCTCAATCTGATATTATTGCTTTCAAGGAAAGCCCGCTAGCACTGGCTCAGGCTCACGAGACGAGGAACAAACTGATGG CTGCACATTCCGAGCTAGCTGAGGAAGGTGCTATCCAGATCGTGATTATAAAGACGACAGGAGATAAGATCCTCAGTCAGCCGCTCGCTGACATAGGAGG GAAGGGATTGTTCACCAAGGAAATTGACGAGGCATTGATCAACGGTGACATTGACATTGCTGTCCACTCGATGAAAGATGTGCCTACTTATTTGCCTGAA CAAACAATCCTCCCTTGTAACATGGAGCGAGAAGATGTCCGAGATGCATTCATCTCCTTGAATGCATCGTCACTCGCAGACCTCCCTGATGGGAGCATAA TTGGTACCGCTTCCCTCCGCAGAAAATCCCAGATACTCCACAGGTATCCCTCGCTTAAGGTGGTAGAAAATTTCCGCGGCAACGTGCAGACGAGGTTACG CAAACTTAATGAAGGAATGGTGCATGCAACGTTGTTAGCTTTAGCTGGCCTAAAACGTTTAAACATGACGGAAAATGTGTCGTCCACTCTGTCAATCGAT GACATGCTCCCTGCCGTTGCTCAAGGAGCCATTGGGATCGCCTGTAGGACTAATGATGATAAAATGGCCGAGTACATAGCTTCACTAAACCATGAAGAGA CTAGATTAGCAGTTGTTTGCGAGAGAGCCTTCTTGTTAACATTGGACGGTTCGTGTCGCACTCCTATTGCTGGATATGCCAGCAGAGATGAGAATGGAGA TTGCATATTCAAGGGACTGGTAGCTTCTCCAGATGGAACCCGCGTGCTTGAGACTTCCAGGAAAGGTGCATACGCCATCGATGATATGATAATGATGGGA AAGGATGCAGGGAAGGAGCTGCTTTCCCGGGCCGGTCCTGGATTCTTCGACTCGTAA
AA sequence Show only first row Show all	>Lus10040987 pacid=23179851 polypeptide=Lus10040987 locus=Lus10040987.g ID=Lus10040987.BGIv1.0 annot-version=v1.0 METLTSLCSSQALVSHTARPMISTTGYSCSLKGRGFSPRTQRMNVIKASVAVEQQTEKTKVALLRIGTRGSFDVLIYGWQYMYWYSICFNWYLLFAASLL HQLLEIPAQSDIIAFKESPLALAQAHETRNKLMAAHSELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPE QTILPCNMEREDVRDAFISLNASSLADLPDGSIIGTASLRRKSQILHRYPSLKVVENFRGNVQTRLRKLNEGMVHATLLALAGLKRLNMTENVSSTLSID DMLPAVAQGAIGIACRTNDDKMAEYIASLNHEETRLAVVCERAFLLTLDGSCRTPIAGYASRDENGDCIFKGLVASPDGTRVLETSRKGAYAIDDMIMMG KDAGKELLSRAGPGFFDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10040987 [exp]	0	1
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10013439 [exp]	1.0	0.9616
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	5.7	0.9152
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	6.9	0.9217
AT2G16800			high-affinity nickel-transport...		Lus10014116 [exp]	13.1	0.7990
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Lus10017047 [exp]	14.4	0.8475
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	14.8	0.8983
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	15.7	0.9105
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	16.0	0.9077
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	17.0	0.9069
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	17.0	0.8285

Compare expression of checked genes

Lus10040987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.