Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23230 289 / 2e-100 NIC2 nicotinamidase 2 (.1) AT5G23220 278 / 5e-96 NIC3 nicotinamidase 3 (.1) AT3G16190 45 / 5e-06 Isochorismatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003300 [exp] 324 / 2e-114 AT5G23230 303 / 4e-106 nicotinamidase 2 (.1) Potri.003G051700 [exp] 48 / 8e-07 AT3G16190 269 / 6e-93 Isochorismatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00857 [flax] [poplar] Isochorismatase Isochorismatase family
Representative CDS sequence Show only first row Show all	>Lus10040988 pacid=23179562 polypeptide=Lus10040988 locus=Lus10040988.g ID=Lus10040988.BGIv1.0 annot-version=v1.0 ATGGCGACACCGAACCTGAAACTGAAATGTTCATCCTACACCAAATACGAAACCAGAAAACGGAATCCAGACCCTAAAACCTCTGTTCTCTTAGTCATCG ACGTCCAGAACTACTTCTCTTCAATGGTCGATCCCATCCTCCCCAACCTCCTCTCCACGATCGACCTTTGCCGCCGCGCCTCCGTCCCCATCTTCTTCAC ACGTCACAACCATAAGAGCCCCGCCGACCACGGCATGCTGGAGGAGTGGTGGGACGGCGATTTAATCATCGACGGCACCCCGGAATCACAGCTCATGCCC CAAATTGCCGAGCTGGCAGCAACTGCAGGGGAAATTGTGGAGAAGAACACCTACAGCGCCTTCGCCAACACGGGACTCCAGCAGAGATTGGAGGATATGG GCGTCAAGGAGGTGATTGTGGCCGGAGTTATGACCAATCTCTGCTGTGAGACCACCGCCAGGGAGGCGTTCGTGAGAGGGTTTAGGGTTTTCTTCTCCGC CGACACCACTGCCACGTCAGATTTGGACCTGCACGAGTCCACGCTTAAGAATTTGGCTTATGGGTTCGCTTACTTGGTTGATTGTCATCGGCTTGGACTT TCTTTCTCTCTAAAGTAG
AA sequence Show only first row Show all	>Lus10040988 pacid=23179562 polypeptide=Lus10040988 locus=Lus10040988.g ID=Lus10040988.BGIv1.0 annot-version=v1.0 MATPNLKLKCSSYTKYETRKRNPDPKTSVLLVIDVQNYFSSMVDPILPNLLSTIDLCRRASVPIFFTRHNHKSPADHGMLEEWWDGDLIIDGTPESQLMP QIAELAATAGEIVEKNTYSAFANTGLQQRLEDMGVKEVIVAGVMTNLCCETTAREAFVRGFRVFFSADTTATSDLDLHESTLKNLAYGFAYLVDCHRLGL SFSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	0	1
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	1.4	0.8866
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	3.3	0.8880
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	4.5	0.8766
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	4.6	0.8820
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	6.3	0.8642
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	7.4	0.8550
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	8.1	0.8710
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10031587 [exp]	9.0	0.8631
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	10.0	0.8321
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	12.0	0.8749

Compare expression of checked genes

Lus10040988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.