Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23240 420 / 5e-144 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G42750 122 / 9e-31 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G05345 67 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 56 / 3e-09 J20 DNAJ-like 20 (.1.2) AT3G13310 53 / 3e-08 Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 56 / 4e-08 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G21080 53 / 3e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT4G36040 50 / 3e-07 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT2G21510 51 / 7e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 51 / 9e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022246 [exp] 135 / 7e-36 AT5G23240 139 / 2e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008768 [exp] 132 / 3e-35 AT5G23240 141 / 6e-39 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10020749 [exp] 117 / 3e-29 AT2G42750 455 / 1e-161 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004485 [exp] 69 / 5e-13 AT3G05345 287 / 2e-98 Chaperone DnaJ-domain superfamily protein (.1) Lus10029916 [exp] 64 / 2e-11 AT3G05345 277 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 62 / 3e-11 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003150 [exp] 60 / 3e-10 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10028453 [exp] 59 / 5e-10 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 59 / 6e-10 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072600 [exp] 463 / 8e-161 AT5G23240 461 / 4e-160 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G347600 [exp] 148 / 8e-41 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G143400 [exp] 110 / 7e-27 AT2G42750 416 / 2e-146 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.004G172300 [exp] 60 / 2e-10 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G058400 [exp] 57 / 3e-09 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.009G131800 [exp] 55 / 4e-09 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G119800 [exp] 56 / 4e-08 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G020700 [exp] 53 / 4e-08 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G022600 [exp] 54 / 1e-07 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 51 / 1e-07 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10040990 pacid=23179991 polypeptide=Lus10040990 locus=Lus10040990.g ID=Lus10040990.BGIv1.0 annot-version=v1.0 ATGCACTCAGCATGCCTCCCCTTCTACCCACCACCACCAGCAGCTTCCACCAAAGGCTCAAATTCACTGAGCAGCTTCCTTTCCCCAGCACTCCCTCCAT TCTACAGGAAAACATTATCATCTCAATCTCATCTCACATGCCGCCCTCCAGCAGCCGCTTCAGCTGTATCATCTTCCTTGATTACAGATTTCGACCTCTA CGATCTTCTCGGGATTCACAGTTCATGTAACCAGTCCCAGATTAAACTTGCTTACAGGGCCCTCCAGAAGCGATGCCATCCCGATATAGCTGGCCCTACC GGCCATGACATGGCCATCGTACTCAACGAAGCTTACTCCATACTCTCTGATCCCAATTCACGCCGGGCTTATGACAAGGAACAAGCCAAGATGGCAGAGC TGCGCGGGTACACGGGGAAGCCGCTCTACTCGTCGTGGGTGGGTTCAGAAAGCGAGGAGAGAGCAGTGTTTGTTGACGAAGTGAAGTGTGTTGGGTGCCT CAAATGTGCCCTGTTTGCCAAGAAGACCTTCGCCATCGAATCTGTGTACGGGAGGGCTAGGGTTGTTGCACAGTGGGCTGATCCTGAAGACAAAATCCAG GCTGCCATTGATACATGTCCCGTCGATTGCATCTCATTTGTGGAGAGGTCAGACTTAGCAGCACTGGAGTTCCTGATGTCCAAGCAGCCACGGGGTAACG TCAGAATCGGAGCAAGCAATTCAGCTGGTGTCCGTGTCTCCAATATCTTCGTTGATGTCAAGAAGTTCCAAACCAGAGTTTCTACTGCCATGAACCAAGG TTCTACGGAGGCAGACATGCAAAGAGAAGCAAAGATGTCAGCAATTCAAGCAATCAGATCACTCTGGCTATACTGGCTAGCACCTATCAATCCAGCATCA CGAAATCAACGACCACATAAACTCAAACTGCTCCCACTTCCAAAGGAATCACAAGAGCCTGACATCAAGAAGCTCCATCAGGCTGCTGCAGCAAGAAGAG ACGCAAGGGAGAGCACAGAGCCTTCACTTCCTCCAAGAAAAGGTGGCGAGCAAGATGAGGAATACTGGGTGCCATCAACTCAACCTATTCCATCCTCTCC CAAGCCATCATCAGTGAGGCCCGAATCGAAGAAGGTGAAGGACGGGCGAAGGTACAGAGCAGTAGAAAAGGAGAGGAAGAGGAGCTTGACGATCCCGGTG GTGGTGGCTACACTGGCAGCTGTTTTGGTGCATCTTCAAGTAGGAGGGAAGGCGGTGGTTGGAGGACTGAATGAACATATAGCTGGGACTGCAGCATTGG ATGCTGTGAATAGCTCATGGATGCAGGTTTCTTTAGCGTGGATGACTTGGTTCCTCATTGGGGCAGCTGCTGTGGAACTTGGGGAATCCATTCGGAGCAA CAAATCATAG
AA sequence Show only first row Show all	>Lus10040990 pacid=23179991 polypeptide=Lus10040990 locus=Lus10040990.g ID=Lus10040990.BGIv1.0 annot-version=v1.0 MHSACLPFYPPPPAASTKGSNSLSSFLSPALPPFYRKTLSSQSHLTCRPPAAASAVSSSLITDFDLYDLLGIHSSCNQSQIKLAYRALQKRCHPDIAGPT GHDMAIVLNEAYSILSDPNSRRAYDKEQAKMAELRGYTGKPLYSSWVGSESEERAVFVDEVKCVGCLKCALFAKKTFAIESVYGRARVVAQWADPEDKIQ AAIDTCPVDCISFVERSDLAALEFLMSKQPRGNVRIGASNSAGVRVSNIFVDVKKFQTRVSTAMNQGSTEADMQREAKMSAIQAIRSLWLYWLAPINPAS RNQRPHKLKLLPLPKESQEPDIKKLHQAAAARRDARESTEPSLPPRKGGEQDEEYWVPSTQPIPSSPKPSSVRPESKKVKDGRRYRAVEKERKRSLTIPV VVATLAAVLVHLQVGGKAVVGGLNEHIAGTAALDAVNSSWMQVSLAWMTWFLIGAAAVELGESIRSNKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	0	1
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	1.0	0.9421
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	2.0	0.9360
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	2.4	0.8967
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	2.8	0.9001
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	3.0	0.9335
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	3.9	0.8998
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	5.2	0.8876
					Lus10024153 [exp]	5.7	0.8818
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	6.3	0.8874
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	7.7	0.8735

Compare expression of checked genes

Lus10040990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.