Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 624 / 0 Major facilitator superfamily protein (.1) AT1G50310 606 / 0 ATSTP9 sugar transporter 9 (.1) AT5G23270 575 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 575 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT1G11260 561 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 550 / 0 STP12 sugar transporter protein 12 (.1) AT5G26340 521 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 518 / 0 STP7 sugar transporter protein 7 (.1) AT3G05960 494 / 2e-171 ATSTP6 sugar transporter 6 (.1) AT5G26250 481 / 2e-166 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 645 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 561 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 546 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 516 / 6e-180 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 515 / 1e-179 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040993 [exp] 503 / 1e-176 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10021924 [exp] 505 / 2e-175 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10005870 [exp] 478 / 5e-165 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 471 / 2e-162 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090700 [exp] 659 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 646 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 641 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 636 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 636 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 548 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 547 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 546 / 0 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 546 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 546 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10040991 pacid=23179988 polypeptide=Lus10040991 locus=Lus10040991.g ID=Lus10040991.BGIv1.0 annot-version=v1.0 ATGGTGGGTGGGGGTTTCGTTGAAAGCGGAGGGTCAGTTCTGAACTACAACTACCCAAGGAACGGATTGAATCTCTACATGTTGTTGACTTGCCTCGTTG CTGCTTGCGGCGGTCTCATCTTCGGATACGATATCGGCATCTCAGGAGGAGTGACGTCGATGGATCCGTTTCTGGAGAAGTTTTTCCCGTCGGTGTACAT GAAGGAGAGAGCTGCTGGCAATGGTCAGAATAACATGTACTGCAAGTTCGACAGTCACCTCCTCACTCTTTTCACATCGTCCCTCTACCTAGCCGCGCTC TTCGCTTCCATTGTTGCGTCTGTTATCACCAGGAAGTGGGGTAGGAAGGTTTCCATCTTCTCCGGCGGCCTCATCTTCCTCGTCGGCGCCATCCTCAACG CTTCCGCCGTTAACGTCGCCATGCTCATCTTCGGCCGAATCTTTCTCGGCATTGGCGTCGGCTTTTGCAATCAGTCAGTTCCTGTGTACCTCAACGAAAT AGCGCCGGCGAATCTTCGGGGGAGGATGAACATCGGCTTTCAAATGATGATCACAGTGGGGATCCTGATAGCCAACATTGTCAACTACTTCACGAACAAA ATGGAGTCTGGAAACGGATGGAGAGTGTCCCTCGGTCTAGCAGCTGTCCCAGCCGTGATCATAACAGTCGGATCCTTATTTATCCTCGACAGTCCCAACT CAATCCTAGAGCGAGGCCACACGGAGAAGTCCAAAGAGATGCTCCGCAAAATCCGCGGAACCGACGTGGTGGAAGCAGAGTTCCAAGATATCCTCAAGGC CACCGAGGCAGCCAAGAAAGTCGAGCACCCATGGAGGAACATTCTTAAACCACGATACAGACCGCAGCTCGTTTTCTGCACTCTGATCCCACTTTTCCAG CAGTTCACCGGTATCAACGTCGTCATGTTCTACGCTCCGGTCCTCTTCAAAACGCTCGGATTGGGCCAGAACGCTTCCCTGATGTCGTCCGTAATCACCG GGTTTGTCAACGTTGGGGCAACGATCGTTTCAATCGTGGCCGTTGATAAGGCAGGGAGGAGGATTCTGTTTTTAGAAGGAGGGGTACAGATGGTAATTTG CCAGGTGGTGGTGGCGGCGCTGATTGGGACCAGCTTCGGCAGCTCGGGGGTTGGAGTGGCGATGTCGACCGGGATGGCGGCGGCGGTGGTGTTTTTCGTC TGTGGGTTTGTGGCGGCGTTTGCATGGTCGTGGGGCCCGCTGGGGTGGCTGATTCCTAGCGAGGTTTGCCCGTTGGAGATCCGGTCAGCAGGGCAGGCTA TCAACACTGGGGTCAACATGTTCTTCACCTTCTTCATCGGGCAGTTTTTCTTGAGTATGCTTTGTGGAATGAAGTACGGGCTGTTCTTCTTCTTTGCGGC GTTTGTGGCTGTGATGACGGCGTTTATCTATTTTCTACTGCCGGAGACCAAGAACGTGCCGATCGAGGATATGGCTGATGTTCTCAGCGCTCATTGGTTC TGGAAGAGGTACTACGCCGCCGCTGATGATGCTCAGAACAAAAAGAGCATTGAATTGAATTGA
AA sequence Show only first row Show all	>Lus10040991 pacid=23179988 polypeptide=Lus10040991 locus=Lus10040991.g ID=Lus10040991.BGIv1.0 annot-version=v1.0 MVGGGFVESGGSVLNYNYPRNGLNLYMLLTCLVAACGGLIFGYDIGISGGVTSMDPFLEKFFPSVYMKERAAGNGQNNMYCKFDSHLLTLFTSSLYLAAL FASIVASVITRKWGRKVSIFSGGLIFLVGAILNASAVNVAMLIFGRIFLGIGVGFCNQSVPVYLNEIAPANLRGRMNIGFQMMITVGILIANIVNYFTNK MESGNGWRVSLGLAAVPAVIITVGSLFILDSPNSILERGHTEKSKEMLRKIRGTDVVEAEFQDILKATEAAKKVEHPWRNILKPRYRPQLVFCTLIPLFQ QFTGINVVMFYAPVLFKTLGLGQNASLMSSVITGFVNVGATIVSIVAVDKAGRRILFLEGGVQMVICQVVVAALIGTSFGSSGVGVAMSTGMAAAVVFFV CGFVAAFAWSWGPLGWLIPSEVCPLEIRSAGQAINTGVNMFFTFFIGQFFLSMLCGMKYGLFFFFAAFVAVMTAFIYFLLPETKNVPIEDMADVLSAHWF WKRYYAAADDAQNKKSIELN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	0	1
AT4G14746			unknown protein		Lus10025761 [exp]	2.0	0.8419
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	5.2	0.8422
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10004439 [exp]	6.6	0.7407
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	10.5	0.8063
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	12.2	0.8063
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	13.6	0.8063
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	14.9	0.8033
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	17.2	0.8016
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	18.5	0.8017
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	18.8	0.7654

Compare expression of checked genes

Lus10040991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.