Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 541 / 0 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 534 / 0 Succinyl-CoA ligase, alpha subunit (.1.2) AT3G06650 99 / 1e-22 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 97 / 5e-22 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017389 [exp] 582 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 566 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 383 / 6e-135 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 377 / 1e-130 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 192 / 1e-59 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10017331 [exp] 159 / 6e-47 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 131 / 6e-37 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10028767 [exp] 112 / 3e-31 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10010186 [exp] 112 / 7e-31 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091400 [exp] 546 / 0 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 515 / 0 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 515 / 0 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 102 / 1e-23 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 96 / 4e-22 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02629 [flax] [poplar] CoA_binding CoA binding domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10040992 pacid=23179617 polypeptide=Lus10040992 locus=Lus10040992.g ID=Lus10040992.BGIv1.0 annot-version=v1.0 ATGGCTCGCCAAGCAACCAAGCTGGTTGCCTCTTTGTCCTCCAAGCTTCGCTCTCCCCATCCCCAGATCATCCCGCTCTCTTCCTCCTCCTCCTCCCATT CTCTGTCGCAATCGCGCTCCTTCGCCGCTGCTCCGCCTCCCCCGCCAGCGGTGTTCGTTGACAAAAACACCCGCATCATTTGCCAGGGCATCACCGGCAA GAACGGGACCTTCCACACCGAACAAGCCATTGAATATGGCACCAAGATGGTTGGAGGGGTCACACCTAAGAAGGGTGGTACAGAACACTTGGGGCTTCCT GTCTTCAACTCTGTGGCTGAGGCAAAGGCTGAAACAAAAGCTAATGCATCAGTGATTTATGTTCCTCCACCCTTTGCAGCTGCAGCTATTATGGAGGCTA TGGAAGCTGAATTGGACCTTGTTGTTTGTATTACAGAAGGAATTCCTCAGCATGACATGGTTCGTGTGAAGGCTGCCCTAAAAAAGCAATCCAAAACAAG ACTAATTGGACCAAATTGTCCTGGTATTATCAAACCTGGAGAATGCAAGATAGGAATCATGCCTGGATATATCCACAAGCCAGGGCGTATTGGAATCGTT TCTCGATCTGGCACATTGACTTATGAGGCTGTTTTCCAAACAACAGCAGTTGGCCTTGGGCAATCCACATGTGTAGGTATTGGCGGTGATCCTTTCAATG GGACAAATTTTGTTGACTGCGTGGAGAAGTTTCTAGCAGATCCTCAGACGGAAGGTATCGTTCTTATTGGTGAGATTGGAGGTACTGCTGAAGAGGACGC TGCTGCTGTAATAAAGGCAAGCAAGACTGAAAAGCCAATTGTTGCGTTCATTGCTGGACTAACGGCTCCACCTGGGCGTCGTATGGGACATGCTGGAGCA ATCGTGTCTGGGGGAAAGGGAACTGCCCAGGACAAGATCAGGACTCTAAAGGATGCTGGAGTGACCGTTGTTGAATCTCCTGCAAAGATTGGCACAGCCA TGTTCAGTGTCTTCAAGGAGAGGGGTCTGGTCAATTAA
AA sequence Show only first row Show all	>Lus10040992 pacid=23179617 polypeptide=Lus10040992 locus=Lus10040992.g ID=Lus10040992.BGIv1.0 annot-version=v1.0 MARQATKLVASLSSKLRSPHPQIIPLSSSSSSHSLSQSRSFAAAPPPPPAVFVDKNTRIICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP VFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIV SRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVEKFLADPQTEGIVLIGEIGGTAEEDAAAVIKASKTEKPIVAFIAGLTAPPGRRMGHAGA IVSGGKGTAQDKIRTLKDAGVTVVESPAKIGTAMFSVFKERGLVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	1.0	0.9750
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	2.4	0.9656
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	2.8	0.9650
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	3.7	0.9613
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	4.0	0.9609
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	4.2	0.9653
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	4.9	0.9533
					Lus10023559 [exp]	5.2	0.9600
AT2G20420			ATP citrate lyase (ACL) family...		Lus10003620 [exp]	5.7	0.9538
AT1G47640			unknown protein		Lus10032870 [exp]	5.8	0.9355

Compare expression of checked genes

Lus10040992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.