Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 540 / 0 Major facilitator superfamily protein (.1) AT1G50310 535 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19930 507 / 1e-178 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 483 / 6e-169 ATSTP11, STP11 sugar transporter 11 (.1) AT1G11260 455 / 4e-158 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 448 / 1e-155 STP12 sugar transporter protein 12 (.1) AT5G26340 414 / 5e-142 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 407 / 2e-139 STP7 sugar transporter protein 7 (.1) AT3G05960 362 / 1e-121 ATSTP6 sugar transporter 6 (.1) AT5G26250 358 / 4e-120 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 712 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10040991 [exp] 464 / 1e-161 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10002597 [exp] 457 / 3e-159 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10018422 [exp] 455 / 4e-158 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 414 / 8e-142 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 412 / 6e-141 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 395 / 2e-134 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10009656 [exp] 392 / 4e-133 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10021924 [exp] 377 / 8e-127 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090700 [exp] 588 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 564 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 560 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 552 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 552 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 468 / 6e-163 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 464 / 1e-161 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.001G110400 [exp] 424 / 9e-146 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 423 / 2e-145 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 417 / 4e-143 AT1G11260 629 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10040993 pacid=23179533 polypeptide=Lus10040993 locus=Lus10040993.g ID=Lus10040993.BGIv1.0 annot-version=v1.0 ATGTTATTCGGAGGACTCGTCTTTCTCGCCGGCTCGATCTTCAACGGCTTTGCAACGAACGTCGCGATGCTCATCATTGGTCGCCTTTTGCTCGGAGTGG GCGTCGGGTTCGCCAATCAGTCCGTCCCAGTTTATTTATCAGAAATGGCGCCTTCTAGACTCAGGGGAGCTCTGAACATCGGATTTCAAATGGCGATCAC GATTGGAATTTTGGCGGCGAGTTTGATTAACTACGGTACGGCTCAGATTAAAGGAGGATGGGGATGGAAGCTATCTTTGGGACTTGCTGCGGTTCCTGCA ATCATGATTACAATCGGATCCATTTTCCTCCCCGATACGCCGAATTCGATCCTGGAGAGGGGGGATACTGAGAAGGCGAGGGAGATGTTGAGGAAAGTTC GCGGCACTGATAATGTGGATGAGGAGTTTCAGGATTTGATTGATGCGTGTCATGCTGCGAAGAGAGTTGATAACCCGTGGAAGACGATCATGGAGCCGAG GTATAGGCCTCAGGTTGTGATTTGCTTTATGATTCCGTTCTTCCAGCAGCTTACTGGGATCAACGTGATTATGTTCTACGCTCCGGTGCTGTTCAAGACT CTGGGGTTTGGGGATGATGCTTCGCTGATGTCTGCTGTTATTACTGGTCTTGTTAATGTGTTTGCGACGTTTGTTTCGATACTGGTGGCTGATAAGTTTG GACGGAGGGTTCTGTTTTTGGAAGGTGGTGTGCAAATGCTCATTTCCCAGTTGCTTGTTGCAGTGATGATTGCCAAGGCATTTGGGACGACAGGGGTCGG CGTGCTATCAAAAGCAGACTCATTGGTTGTGTTGATCTTGATATGCTTCTACGTTGCAGGATTCGCATGGTCATGGGGACCTTTAGGGTGGTTAGTGCCA AGTGAGATATGTCCATTGGAGATCAGATCAGCTGGACAAGCCATTAACGTGTCAGTGAACATGTTATTCACATTCATCATTGGTCAGTTCTTCTTGGCAA TGCTCTGCAGCATGAAATTTGGGCTCTTCCTCTTCTTTGGTGGATTTGTGCTCATCATGACCACCTTTGTTTACTTCTTCATCCCGGAGACCAAAAACGT TCCTATTGAAGAGATGAACAGGATTTGGAAGGCACATTGGTTCTGGGGAAAGTACATGCCCGATGATGCATTGGAGGGCTACAACAACAGTAAGATGAAG GAATAA
AA sequence Show only first row Show all	>Lus10040993 pacid=23179533 polypeptide=Lus10040993 locus=Lus10040993.g ID=Lus10040993.BGIv1.0 annot-version=v1.0 MLFGGLVFLAGSIFNGFATNVAMLIIGRLLLGVGVGFANQSVPVYLSEMAPSRLRGALNIGFQMAITIGILAASLINYGTAQIKGGWGWKLSLGLAAVPA IMITIGSIFLPDTPNSILERGDTEKAREMLRKVRGTDNVDEEFQDLIDACHAAKRVDNPWKTIMEPRYRPQVVICFMIPFFQQLTGINVIMFYAPVLFKT LGFGDDASLMSAVITGLVNVFATFVSILVADKFGRRVLFLEGGVQMLISQLLVAVMIAKAFGTTGVGVLSKADSLVVLILICFYVAGFAWSWGPLGWLVP SEICPLEIRSAGQAINVSVNMLFTFIIGQFFLAMLCSMKFGLFLFFGGFVLIMTTFVYFFIPETKNVPIEEMNRIWKAHWFWGKYMPDDALEGYNNSKMK E

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10040993 [exp]	0	1
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10023114 [exp]	9.8	0.9961
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	15.2	0.9958
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10035266 [exp]	15.2	0.9925
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	16.0	0.9884
					Lus10036646 [exp]	16.4	0.9957
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	16.5	0.9848
					Lus10001326 [exp]	18.6	0.9958
					Lus10026755 [exp]	21.4	0.9958
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	24.0	0.9958
					Lus10016593 [exp]	26.3	0.9958

Compare expression of checked genes

Lus10040993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.