Plant FIBer expression Database

Lus10040995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04190 87 / 3e-18 PKS4 phytochrome kinase substrate 4 (.1)
AT2G02950 46 / 6e-05 PKS1 phytochrome kinase substrate 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013442
[exp]
467 / 1e-163 AT5G04190 67 / 2e-12 phytochrome kinase substrate 4 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G090000
[exp]
315 / 1e-100 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1)
Potri.007G074056
[exp]
304 / 7e-97 AT5G04190 102 / 2e-23 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence
>Lus10040995 pacid=23179741 polypeptide=Lus10040995 locus=Lus10040995.g ID=Lus10040995.BGIv1.0 annot-version=v1.0
ATGATGGAAAGACCCACAACCATGAGAGCAATTCCAGGGAAGCAAGGATCATTATTTCCTCCTCACTTCCCTTTCCCACACAACAACAAAACAGCCATAT
TAGATGCTTCTTACGACTCCGAGATCAGCATTTTCGACGCCCAGAAGTACTTCAACGAAGGCGGCACCGTACTCAACACCAAGAAAGTATCATCCCCTGT
AATTTCTACTATTGGCGGATCTGGACTCGAGCGCATTTCTGAACTCCCTCCTAGATTTTCATCTGCGTCCTCGTCTGTGGACGGGTATGGATACGGAAAT
CGGAACTACAGAACCCGATCGTTCCACGCCACACCAACTGCGTCGTCGGAGGCCAGCTGGAACAGCCAGACCGGGTTGCTCTCTAATCCCCCGGGTGCAA
TGGCTGTATCGGTCAGACATCATCATCATAATCAAATTTCCGTCGACGATCATAAGAAAATTGGTTCTACTGCTAAGAAATGGCTTCTGAGGAGGCGATG
CCCTTGCTCCGGTAAGAAATCAGTACAGGTTGAGGAGAAGGCGGCACCGGAACCTAGAATCCAGCCAGCAGCAGGCCCATCTCTCAGTCCAAATTCTAGG
CTAATGATCAATTCGATGATGAAGAGACAGGCTAGCATTACTCCGAAAAGTAATTTTAGCAGCTCAGCTGCTTCAAATGATTGGTCGGAGCGACGGGAAG
TAGCGGCGGCGCCGGTGGAGGTTGTTCCCAATGTCGTTCGAAGGATATCCGCAGAGACTAATAGGTTCGTCCGCGGTCCAGGATTAGGTCAACCCCGCCG
CGTTGTATTGACTCCTAATTTCAGCGAAGGAAACAAGGACATCAGCAACGGCGGAGGATTTACTTTCCCGATACTAAGTCAGGCGGCTGCAGTGCCGCCG
CCGGTGAAATTGGTGCTGAATAATGGGGTGCGGAAGCCGTTGTCCTCCCAGCTGGAGGATCCGCCGCGAGAGTCGTTGGAAGTTTTCCGTCCTGCAGAGG
AGAAGGTAATTGTTGCGAAAATCAGCGCGGAGGGGAGATCGAGCTTTACTTTCCCGGCAAGCCCTAGATCGCGACTGACGGTAACAGAGGACGACATGGC
GAGCGATGCGAGTTCGGACCTGTTCGAGATCGAGAGCTTCTCGACGCAAACGACGGGAAATCCGCTAAACCGTCGTGATTCAATGGAGGACGCATCGACA
TTTAACGCCAGGAGATTGGGAAGAGGAGGGAGAGTGTATGAGAAGAGCGTGGAAGAGGAGGAATTAGAAGAGGAGGAATGTTATGAGCCGAGCGAGGCGA
GTATAGAGTGGAGCGTAACGACGGCGGAGGGATTCGACAGGGCAAGCGTGGCGAACTATTCGGAGGCCGGGGAGGAAGTTAGGTATACGATGATGAGGAA
GAGGATAGAGGAATCGGAGGAGGAATCGGAGAAGAAGAGCGGGAAGAAGAGGGGATCAGCGGGGTTGTTGAGCTGTCGGTGCGAGAAGGCGGTGAGTGTA
GGGCCGCCGCCGCATTTGAATGGCGGTGGTGGTGGTGGTAGGGCGGGGGCGGTGGAGGGTAACGGGAAGAAGCCACCACTTCCACTTGGGAGATCTCGCT
CAACTGCGCGCTCGTCACTTCCTTCCCCAGCATAA
AA sequence
>Lus10040995 pacid=23179741 polypeptide=Lus10040995 locus=Lus10040995.g ID=Lus10040995.BGIv1.0 annot-version=v1.0
MMERPTTMRAIPGKQGSLFPPHFPFPHNNKTAILDASYDSEISIFDAQKYFNEGGTVLNTKKVSSPVISTIGGSGLERISELPPRFSSASSSVDGYGYGN
RNYRTRSFHATPTASSEASWNSQTGLLSNPPGAMAVSVRHHHHNQISVDDHKKIGSTAKKWLLRRRCPCSGKKSVQVEEKAAPEPRIQPAAGPSLSPNSR
LMINSMMKRQASITPKSNFSSSAASNDWSERREVAAAPVEVVPNVVRRISAETNRFVRGPGLGQPRRVVLTPNFSEGNKDISNGGGFTFPILSQAAAVPP
PVKLVLNNGVRKPLSSQLEDPPRESLEVFRPAEEKVIVAKISAEGRSSFTFPASPRSRLTVTEDDMASDASSDLFEIESFSTQTTGNPLNRRDSMEDAST
FNARRLGRGGRVYEKSVEEEELEEEECYEPSEASIEWSVTTAEGFDRASVANYSEAGEEVRYTMMRKRIEESEEESEKKSGKKRGSAGLLSCRCEKAVSV
GPPPHLNGGGGGGRAGAVEGNGKKPPLPLGRSRSTARSSLPSPA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G04190 PKS4 phytochrome kinase substrate 4... Lus10040995
[exp]
0 1
AT5G04190 PKS4 phytochrome kinase substrate 4... Lus10013442
[exp]
1.0 0.9924
AT1G50310 ATSTP9 sugar transporter 9 (.1) Lus10040993
[exp]
16.0 0.9884
AT2G10940 Bifunctional inhibitor/lipid-t... Lus10027704
[exp]
18.7 0.9488
Lus10036646
[exp]
20.0 0.9850
AT1G50310 ATSTP9 sugar transporter 9 (.1) Lus10013441
[exp]
23.7 0.9846
AT2G28260 ATCNGC15 cyclic nucleotide-gated channe... Lus10021461
[exp]
25.8 0.9562
AT4G35160 O-methyltransferase family pro... Lus10017691
[exp]
27.0 0.9834
AT3G15990 SULTR3;4 sulfate transporter 3;4 (.1) Lus10043247
[exp]
28.9 0.9831
Lus10026149
[exp]
31.0 0.9824
AT4G01070 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYL... Lus10039588
[exp]
32.4 0.9007

Lus10040995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.