Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19960 1047 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 996 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54280 736 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT4G27370 674 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33240 431 / 7e-127 ATXID, XID myosin XI D (.1) AT5G43900 418 / 1e-123 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04600 419 / 5e-123 ATXIA, XIA myosin XI A (.1) AT1G54560 416 / 1e-122 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G17580 415 / 2e-122 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT4G33200 409 / 2e-120 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013443 [exp] 1244 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10017377 [exp] 1113 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 994 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10038576 [exp] 707 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10037876 [exp] 700 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10032597 [exp] 417 / 3e-124 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 420 / 4e-124 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 407 / 1e-123 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017160 [exp] 416 / 7e-123 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074800 [exp] 1120 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.005G089200 [exp] 1115 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.001G407000 [exp] 759 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 729 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.006G220000 [exp] 427 / 6e-127 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.006G145700 [exp] 421 / 1e-124 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 412 / 2e-121 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.008G174500 [exp] 412 / 2e-121 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.013G043900 [exp] 412 / 3e-121 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G254300 [exp] 408 / 4e-120 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10040996 pacid=23179981 polypeptide=Lus10040996 locus=Lus10040996.g ID=Lus10040996.BGIv1.0 annot-version=v1.0 ATGAATGGAGAAAGCAATGGGGGAGGTTATGATTGTATTGAGTCACCATATAGTCGGCATGCCATGTTAAACGAAGAGAGGCCTTCTGTGTCTGATGCGA ACCAGGATGTTGTGTCTTCACCTGCTACTGTGTCTATTATGGGTAATGAACGTAGGTGGTCAGACACAACGTCCTACAATACAAAGAAGAAGCTCCGATC TTGGTTTCAACTTGCAAATGGGGACTGGGAGCTGGGGAGTATAGTCTCAACGTCAGGGAGTGATTCTATTATTACAACCTCTGATGGGAAAGTACTAACA GTGAAATCTGAAAGTCTTGTACCAGCAAATCCTGATATACTTGATGGTGTAGATGATCTGATGCAGCTTAGTTACTTAAGCGAGCCATCAGTCCTATACA ATCTTCAGTACAGATACAATCAGGATATGATATATACGAAAGCAGGACCTGTGTTAGTAGCTATTAATCCCTTTAAGAAGGTTCCTTTGTACGGGAATGA TTTCATCGATGCATACAGAAATAAATCTACTGATAACCCGCATGTGTATGCCATCACTGACACAGCTATCAAAGAGATGATACGAGTTAGTTGTCTGGAC GGTTGGACCTGTGACATTTACTCAAGTCAAGGAGATAGCATGACTGAGAAGTTAGACATTCTGAGAGTTGTCATGAATGGTGAGAGTGGAGCAGGAAAGA CCGAGACTGCTAAGATAGCAATGCAGTATTTGGCTGCTCTTGGTGGTGGTAGTGGTATAGAGTATGAGATACTGAAAACTAATCCAATTTTAGAAGCATT TGGTAATGCGAAGACTTTGAGGAATGACAACTCGAGTCGCTTCGGAAAGCTGATTGAGATCGACTTTAGTGAAACTGGAAAAATTTCGGGTGCTAGAATT CAAACTTTTATATTTACTGTGGAGCAGTCTAGAGTGGTGCAATGCATAGAAGGAGAAAGGTCTTATCACATTTTCTATCAGCTTTGTGCTGGTGCTCCAT CAAGACTTAGAGATAAAATACATTTGAAGAGTGTGAATGATTATAAATATCTGAGACAGAGTGACTGTTGGTCAATAAATGGGGTTGATGACGCGCAAAA CTTTCACATTGTTACGGAAGCTTTAGACACTGTTCATGTTAGCAGGGAGGATCAAGAGAATGTATTTGCAATGCTTGCAGCTGTTTTGTGGCTGGGAAAT GTCTCATTTTCTGTTATCGATAATGAGAATCATGTTGAGCCTTTGGAAGATGAATGTCTGGTGTCTGTTGCAGAACTAATTGGTTGCAAAGTTGAGGAGC TAAAGCTGGCGTTGTCAACTCGGAAAATGAGAGTTGGCAATGATACCATTATCCAGAAGCTAACTTTATCCCAGGCCATGGATACAAGAGATGCTTTGGC AAAGTCCATTTATGCTTGTCTCTTTGAATGGCTGAGGAATAGCTTTGAGCAGTTCTGCATAAATTATGCCAATGAGAGACTACAGCAACACTTCAATCGC CATCTATTCAAGTTAGAACAAGAGGAATATATCCAAGATGGCATTGATTGGACGAGAGTCGATTTTGAGGATAATCAAAATTGTCTCAACCTTTTCGAAA AGAAACCACTTGGGTTGCTGTCATTGTTAGATGAAGAATCCACTTTCCCTAATGGCACGGATTTGACTTTAGCCGACAAGCTTAAGCAGCATCTGCAGTC TAACTCATGTTTCAGAGGAGACAGAGGGAAAGCTTTTACAGTCGGTCATTATGCTGGGGAGGTTACATATGATACAACTGGGTTTCTGGAGAAAAATAGG GACTTATTGCATATGGACGCTATTCAGCTTCTGTCTTCATGCTCATGCCATCTTCCCCAGAAGTTTGCATCAAGTATGCTCGTGCAAACCGAAAAGCCTG TCACTGGTCCTTTACATAAAGCTGGTGGAGCAGATTCCCAGAAGCTGAGTGTTGCAACAAAGTTCAAGAGGAATAGCTTTGAGCAGTTCTGCATAAATTA TGCCAATGAGAGACTACAGCAACACTTCAATCGCCATCTATTCAAGTTAGAACAAGAGGAATATATCCAAGATGGCATTGATTGGACGAGAGTCGATTTT GAGGATAATCAAAATTGTCTCAACCTTTTCGAAAAGAAACCACTTGGGTTGCTGTCATTGTTAGATGAAGAATCCACTTTCCCTAATGGCACGGATTTGA CTTTAGCCGACAAGCTTAAGCAGCATCTGCAGTCTAACTCATGTTTCAGAGGAGACAGAGGGAAAGCTTTTACAGTCGGTCATTATGCTGGGGAGGTTAC ATATGATACAACTGGGTTTCTGGAGAAAAATAGGGACTTATTGCATATGGACGCTATTCAGCTTCTGTCTTCATGCTCATGCCATCTTCCCCAGAAGTTT GCATCAAGTATGCTCGTGCAAACCGAAAAGCCTGTCACTGGTCCTTTACATAAAGCTGGTGGAGCAGATTCCCAGAAGCTGAGTGTTGCAACAAAGTTCA AGGGTCAACTCTTCCACTTAATGAAACGCCTAGAAAGCACCACACCACATTTCATACGCTGCATAAAACCCAACAACAGTCAATCTCCGAGATCATATGA TCAGGGACTTGTATTGCAACAGCTCAGATGTTGTGGGGTCCTAGAGGTTGTCCGAATATCCCGGTCAGGATTTCCTACAAGAGTGACGCATCAGAAGTTT TCCAGAAGGTACGGTTTCCTTCTACTGGAAAATGCCACCTCTCGAGACCCACTTGGTGTTTCTGTGGCAATTCTTCACCAGTTTGGTATCTTGCCTGAGA TGTATCAAGTTGGTTATACAAAGTTATTTTTCCGCACTGGACAGATTGGAATGCTTGAAGATACAAGAACCCGCACTCTTAATGGCATTTTACGCGTTCA AAGCTGTTTCCGGGGTCACCAAGCTCGTTGCTACCTTAGACACCTTAGGAGTGGAATAGCCGCTCTTCAGTCATTTATTCGAGGGGACAAGATCCGAAAA GAATACTTATTGCTACGGGGAAGACGTAGGGCTGCCATTGTTATCCAAAGGCAGGTGAAGAGCATGGTTTGCAGGAATAAATATAAGAACATTCATCAGG CATCACTCTTAATACAATCCGTTATTCGTGGATGGTTGGTTAGAAGATGCTCCGATGATGTGGGGATATTACTTTCAAGGGTCAAGGGGAATGAATCGGA GGAAGTGCTGGTAAAGGCGTCGTTTCTTGCTGATTTACAGCGCCGGGTTCTCAAGGCAGAGGCCGGCTTTAGAGAGAAAGAAGAGGAGAATGACATCCTC AACCAGCGGATTCAGCAGTACGAGAGCCGATGGTCGGAATATGAAGTGAAGATGAAGTCAATGGAGGAAGTGTGGCAGAAACAGATGAGATCCTTGCAAT CAAGCCTGTCGATCGCAAAGAAGAGTCTTGCTATCGATGATTCCGAGAGGAACTCAGATGCTTCAGTCAATGCAAGTGATGAAAGGGAGTCTAGTTGTGA TACCGGAAGCAATTATAGAAGTCAGGAGAGTAATGGGCTGAGACCAATGAGTGCAGGTTTGAGCGTGATAAGCCGGTTGGCCGAAGAGTTTGAACAGAGA AGTCAAGTATTTGGGGATGATGCAAAGTTCTTGGTTGAGGTTAAATCTGGCCAGGTGGACGCAACCTTGAACCCGGACAGAGAACTTAGGAGGTTGAAGC AGATGTTTGAGAGTTGGAAGAAGGATTACAGTGGGAGGTTAAGGGAAACAAAGTTGATACTGAATAAGCTTGGGAGTGATGAAGGCGCCCTTGAGAAAGT GAAGAAGAAATGGTGGGGGAGGAGGAACAGCATTAGGTAG
AA sequence Show only first row Show all	>Lus10040996 pacid=23179981 polypeptide=Lus10040996 locus=Lus10040996.g ID=Lus10040996.BGIv1.0 annot-version=v1.0 MNGESNGGGYDCIESPYSRHAMLNEERPSVSDANQDVVSSPATVSIMGNERRWSDTTSYNTKKKLRSWFQLANGDWELGSIVSTSGSDSIITTSDGKVLT VKSESLVPANPDILDGVDDLMQLSYLSEPSVLYNLQYRYNQDMIYTKAGPVLVAINPFKKVPLYGNDFIDAYRNKSTDNPHVYAITDTAIKEMIRVSCLD GWTCDIYSSQGDSMTEKLDILRVVMNGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIDFSETGKISGARI QTFIFTVEQSRVVQCIEGERSYHIFYQLCAGAPSRLRDKIHLKSVNDYKYLRQSDCWSINGVDDAQNFHIVTEALDTVHVSREDQENVFAMLAAVLWLGN VSFSVIDNENHVEPLEDECLVSVAELIGCKVEELKLALSTRKMRVGNDTIIQKLTLSQAMDTRDALAKSIYACLFEWLRNSFEQFCINYANERLQQHFNR HLFKLEQEEYIQDGIDWTRVDFEDNQNCLNLFEKKPLGLLSLLDEESTFPNGTDLTLADKLKQHLQSNSCFRGDRGKAFTVGHYAGEVTYDTTGFLEKNR DLLHMDAIQLLSSCSCHLPQKFASSMLVQTEKPVTGPLHKAGGADSQKLSVATKFKRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDF EDNQNCLNLFEKKPLGLLSLLDEESTFPNGTDLTLADKLKQHLQSNSCFRGDRGKAFTVGHYAGEVTYDTTGFLEKNRDLLHMDAIQLLSSCSCHLPQKF ASSMLVQTEKPVTGPLHKAGGADSQKLSVATKFKGQLFHLMKRLESTTPHFIRCIKPNNSQSPRSYDQGLVLQQLRCCGVLEVVRISRSGFPTRVTHQKF SRRYGFLLLENATSRDPLGVSVAILHQFGILPEMYQVGYTKLFFRTGQIGMLEDTRTRTLNGILRVQSCFRGHQARCYLRHLRSGIAALQSFIRGDKIRK EYLLLRGRRRAAIVIQRQVKSMVCRNKYKNIHQASLLIQSVIRGWLVRRCSDDVGILLSRVKGNESEEVLVKASFLADLQRRVLKAEAGFREKEEENDIL NQRIQQYESRWSEYEVKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERESSCDTGSNYRSQESNGLRPMSAGLSVISRLAEEFEQR SQVFGDDAKFLVEVKSGQVDATLNPDRELRRLKQMFESWKKDYSGRLRETKLILNKLGSDEGALEKVKKKWWGRRNSIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	0	1
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	1.0	0.9407
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10026359 [exp]	1.4	0.9236
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	4.2	0.8995
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	5.7	0.8998
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	8.4	0.8985
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	11.5	0.9124
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10024879 [exp]	11.6	0.9074
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	13.4	0.8967
AT3G58650			unknown protein		Lus10016854 [exp]	14.0	0.9167
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	15.1	0.9050

Compare expression of checked genes

Lus10040996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.