Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 370 / 8e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 358 / 1e-113 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 332 / 9e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 337 / 3e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 327 / 2e-101 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 320 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 324 / 4e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 319 / 5e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 321 / 8e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 316 / 3e-97 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016509 [exp] 875 / 0 AT1G11290 361 / 1e-114 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040776 [exp] 690 / 0 AT1G11290 272 / 7e-82 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 384 / 2e-123 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 365 / 9e-114 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030249 [exp] 349 / 3e-111 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 353 / 5e-111 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 337 / 1e-105 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 336 / 3e-105 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020081 [exp] 333 / 9e-105 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035100 [exp] 743 / 0 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 382 / 2e-120 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 371 / 2e-118 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 349 / 1e-109 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 350 / 4e-109 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G146800 [exp] 342 / 1e-108 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 342 / 2e-108 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 335 / 3e-104 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 329 / 2e-103 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G067000 [exp] 330 / 6e-103 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040997 pacid=23179877 polypeptide=Lus10040997 locus=Lus10040997.g ID=Lus10040997.BGIv1.0 annot-version=v1.0 ATGGCAGTGACCTTCCACCGCTTCCCTCCATATTCCTCTCTCTCCAAAGCATGGACACGCGCCGCCAGTCTGCTGATTTCCTCCCTTCCGACGACAGGCG GCGAAGATCGACATAAGCAGCCGGATTCGCTCGAACTTGAGCTTCTGGCCGGCCTTCACAATCCTGGATCTTTATCCAACCCTTACCTCATTAACAGAAC TGTCTCCTTCTGTGCCAAGTCTCCTTCCTACTTCTCCTTCGAGGCAGGTATCCAACTCCATTCCCCTATAGTTAAACTAGGCTTCACTTCAAATGTGTAT GTATGTACTGCAGTCCTCGATATGTACGCCAAGTATAGCGACATAAGGAACGCCCACAAACTGTTCGACGAAATGCCGCAGAGAAACAGTGTCACTTGGA ATTCTCTTATTTCTGGTTATTTGGATGCCGATTTCCCGAAAATAGCGGTTAGATTGTTTGTTGAGATGCTCCGTGAGGCAGCTTCCGTTACTCCATTTAG CCTTTCTAGCTGTCTGGTTGGTTGTTCACAGCTGGACAACAAGGAGCTTGGAAGACAGCTTCATGGAGCAAGTTTGAAAGCAGGGTTTGGTTACCATGTC GTTGTGGGAACCGTTCTGATTGATATGTACTCAAAGTCTTCTAGCGTTGGCGAGTCGAAGCTGGTGTTCGAGCGTATAGTGAATAAGAATGTTATTACCT GGACATCTATGGTTACTGCATATGCGCAGAATGACAAACCTTATGAAGCTATGGTTGTGGCGAGAGAGATGATGCAGTGCGGTATTAAGTTAAACTGTGT GACGTATAACAGTTTACTGAGTTCGTTTTCTCGCCCGGATTACGTAGAATGCTGCAAGCAAGTTCACTGTTGCGTAATTCGCCAAGGATTGGAGTCTAAT AAGTATATAGCTGTCACTCTGGTTACTGTCTACTCAAAATGTAGTAATAGCCTGGAAGAATTTGTGAAGTTGTGCTCCAGTTTGGCGATATGGGATCAAG TATCTTGGAATGCCGTGGTTGCTGGTTACTGCAACTTAGAATGCGAAAAGGAAGCTCTCAGATGTTTCTGCGAGATGAGGCGGTTTGGGGTTGATGGTGA TGCTTACACATTTACAAGTCTGTTGGGAGCCATTGGAAGTAGTTCGTTTCTGGAAGAGGGAAGAGAGGTTCATGCTCTCATTTTGAAGACCGGATATACT TCGAGTTTGTGTGTTGAGAACGGTATTGTTTCAATGTATGCTAGGTGTGGCGCTATTGAAGAATCAAAGAGGATGTTCTGGTTGATTCCAAAACACGATA TAATCTCGTGGAATTCTCTTTTAACGGCATGTGCACATCATGGATACGGCGAGGAAGCTGTGGAATTATTTGAAGAGATGAGGAAAGGCGAGACGACAAA ACCGGATGCCACCACTTTTCTTGCGGTGCTATCTGGATGCAGCCATGTTGGTTTTGTGAACAAAGGACTTGACTACTTTGAATTGTTGAAGAATGATTCT TCACTCGGACCGCCTAGATTAGAGCATTATGCTAGTGTGGTCGACATTTTTGGTCGAGCTGGATATCTGAAAGAAGCTGTTACTTTTATCAGCAAGATGC CGATAAAACCTGGGCCTTCAGTCTATAAAGCACTGCTCAGTGCATGTTTAGTACACGGAAATATAGGAATTGCAGAGTATTCTGCCAGAAAGCTGCTGGA TTTATGGCCTAATGATAGTGCAGCATACATAATGCTTTTCAATATGTTGAAAACAAGTGATAATTGGGATGATGCAGCAGTTGTGTACAAACTGATCTGT GACAGAGGTATGAAGAAAATGCCTGGTTGTAGTTGGTTCTGA
AA sequence Show only first row Show all	>Lus10040997 pacid=23179877 polypeptide=Lus10040997 locus=Lus10040997.g ID=Lus10040997.BGIv1.0 annot-version=v1.0 MAVTFHRFPPYSSLSKAWTRAASLLISSLPTTGGEDRHKQPDSLELELLAGLHNPGSLSNPYLINRTVSFCAKSPSYFSFEAGIQLHSPIVKLGFTSNVY VCTAVLDMYAKYSDIRNAHKLFDEMPQRNSVTWNSLISGYLDADFPKIAVRLFVEMLREAASVTPFSLSSCLVGCSQLDNKELGRQLHGASLKAGFGYHV VVGTVLIDMYSKSSSVGESKLVFERIVNKNVITWTSMVTAYAQNDKPYEAMVVAREMMQCGIKLNCVTYNSLLSSFSRPDYVECCKQVHCCVIRQGLESN KYIAVTLVTVYSKCSNSLEEFVKLCSSLAIWDQVSWNAVVAGYCNLECEKEALRCFCEMRRFGVDGDAYTFTSLLGAIGSSSFLEEGREVHALILKTGYT SSLCVENGIVSMYARCGAIEESKRMFWLIPKHDIISWNSLLTACAHHGYGEEAVELFEEMRKGETTKPDATTFLAVLSGCSHVGFVNKGLDYFELLKNDS SLGPPRLEHYASVVDIFGRAGYLKEAVTFISKMPIKPGPSVYKALLSACLVHGNIGIAEYSARKLLDLWPNDSAAYIMLFNMLKTSDNWDDAAVVYKLIC DRGMKKMPGCSWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	1.0	0.8754
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	2.4	0.8288
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	3.5	0.7822
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	4.0	0.8114
					Lus10029579 [exp]	5.7	0.8171
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	6.3	0.8078
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	6.3	0.7841
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	6.6	0.7830
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	9.2	0.7799
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	10.0	0.7704

Compare expression of checked genes

Lus10040997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.