Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23340 595 / 0 RNI-like superfamily protein (.1) AT4G15475 153 / 4e-41 F-box/RNI-like superfamily protein (.1) AT5G01720 118 / 1e-28 RNI-like superfamily protein (.1) AT5G27920 117 / 3e-28 F-box family protein (.1) AT1G21410 112 / 2e-27 SKP2A F-box/RNI-like superfamily protein (.1) AT5G25350 111 / 2e-26 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 110 / 7e-26 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT3G07550 105 / 4e-25 RNI-like superfamily protein (.1.2) AT3G58530 103 / 2e-24 RNI-like superfamily protein (.1) AT1G77000 97 / 5e-22 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013444 [exp] 806 / 0 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 151 / 1e-39 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10041087 [exp] 134 / 2e-35 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 134 / 3e-35 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10001264 [exp] 119 / 5e-29 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10002913 [exp] 117 / 2e-28 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 116 / 1e-27 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012214 [exp] 114 / 4e-27 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10012294 [exp] 110 / 9e-27 AT3G58530 474 / 7e-169 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088800 [exp] 623 / 0 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.007G075600 [exp] 300 / 2e-100 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 123 / 3e-30 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 121 / 9e-30 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.017G056400 [exp] 117 / 3e-29 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.018G027700 [exp] 114 / 2e-27 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 114 / 4e-27 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 114 / 4e-27 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 108 / 3e-26 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 110 / 5e-26 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040998 pacid=23179646 polypeptide=Lus10040998 locus=Lus10040998.g ID=Lus10040998.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCAATCAGCATAAACTCGGCATTGACGGACGACGAGCTGCGGTCCATTCTGGGTAAGCTAGAGGAGGACAAGGATAAGGAGATATTTGGGT TGGTGTGCAAGAGATGGCTGAGATTGCAGAGTACTGAAAGGAGAAAACTTGCTGCTCGAGCTGGACCCCACATGCTCCAGAAAATGGCCGCCAGATTCTC TAGGCTCCTTGAATTGGACCTCTCTCAGTCCGTCTCCAGGTCCTTTTACCCCGGTGTCACCGATTCCGATCTCGCTGTAATTGCTGATGGCTTCAAGTCC CTCCGACTCCTCAATTTGCACAATTGCAAAGGTGTCACTGATCGTGGAATGATGTCAATCGGGAATGGGCTTCCTTGCCTGCAAACCTTGGATGCTTCCT ATTGTAGAAAGCTAACGGACAAAGGACTATCAGCAGTGGCCGAGGGCTGTCCTGATTTGCGTAAGCTTCACCTAGCTGGTTGCAGGTTTCTCACTGACGA AATACTTAAAGCTCTCGCCACAAACTGCACCAACCTAGAGGAGTTGGGCCTGCAAGGTTGCTCCAACTTAACAGATTCTGGACTTGATCATCTCGTCAGT GGCTGTCGCCATATCAAGTTCTTAGACATCAACAAATGCAGCAATGTAGGGGACTTGGGGGTTTCCAGTGTTTCCAAGGCGTGTTCTGCTTCCTTGCAGA CGCTAAAGCTGTTGGATTGCTATAAAGTAGGGGATGAGTCAATTTTCACTTTGGCAAGACACTGTGAAAATCTCGAGACCCTCATCATCGGAGGCTGTAG AGATATATCTGATGCATCTATGAAGTCGTTGGCCACTGCTTGCAGCCGGAGTCTGAAGAATTTGCGGATGGACTGGTGTTTGAATGTGTCTGATTCGTCA CTAAGTCGCATCCTTGGCGAGTGCAGAAAGCTGGAGGCTTTGGATATTGGATGCTGTGAAGAGATAACAGATGCTGCTTTTGGGGGATTGGCCATGGGTG AGACTGATCTGGAGCTCAAAGTTTTGAAGGTCAGTAACTGTCCAAAGATTACCGTTACTGGGATAAGAATGCTTTTGGATAAATGCATCAACTTGGAGTA CTTGGATGTAAGGTCCTGCCCTCATGTGACAAAGTTCGAATGCGATGAGGCTGGCTTGCATTTTCCATCATCTTGTAAAGTGAACTTCACTGGTAGTCTG AATGAGCCAGATGTTCTAGTCTGA
AA sequence Show only first row Show all	>Lus10040998 pacid=23179646 polypeptide=Lus10040998 locus=Lus10040998.g ID=Lus10040998.BGIv1.0 annot-version=v1.0 MASSISINSALTDDELRSILGKLEEDKDKEIFGLVCKRWLRLQSTERRKLAARAGPHMLQKMAARFSRLLELDLSQSVSRSFYPGVTDSDLAVIADGFKS LRLLNLHNCKGVTDRGMMSIGNGLPCLQTLDASYCRKLTDKGLSAVAEGCPDLRKLHLAGCRFLTDEILKALATNCTNLEELGLQGCSNLTDSGLDHLVS GCRHIKFLDINKCSNVGDLGVSSVSKACSASLQTLKLLDCYKVGDESIFTLARHCENLETLIIGGCRDISDASMKSLATACSRSLKNLRMDWCLNVSDSS LSRILGECRKLEALDIGCCEEITDAAFGGLAMGETDLELKVLKVSNCPKITVTGIRMLLDKCINLEYLDVRSCPHVTKFECDEAGLHFPSSCKVNFTGSL NEPDVLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	0	1
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	1.7	0.8428
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	3.5	0.8210
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	3.7	0.8096
AT4G14380			unknown protein		Lus10021182 [exp]	4.2	0.8352
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10008512 [exp]	5.5	0.7857
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	6.2	0.7867
					Lus10017454 [exp]	6.3	0.8167
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	9.2	0.8109
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	10.5	0.8130
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10017502 [exp]	10.7	0.7639

Compare expression of checked genes

Lus10040998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.