Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15000 456 / 2e-158 SCPL50 serine carboxypeptidase-like 50 (.1) AT5G22980 187 / 2e-53 SCPL47 serine carboxypeptidase-like 47 (.1) AT3G45010 178 / 2e-50 SCPL48 serine carboxypeptidase-like 48 (.1) AT3G10410 171 / 1e-47 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G52000 135 / 6e-35 SCPL36 serine carboxypeptidase-like 36 (.1) AT3G52010 131 / 2e-33 SCPL37 serine carboxypeptidase-like 37 (.1) AT1G61130 130 / 4e-33 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G63470 130 / 8e-33 SCPL40 serine carboxypeptidase-like 40 (.1) AT2G05850 126 / 2e-31 SCPL38 serine carboxypeptidase-like 38 (.1) AT3G25420 124 / 1e-30 SCPL21 serine carboxypeptidase-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042334 [exp] 446 / 3e-154 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 440 / 7e-152 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10013446 [exp] 221 / 3e-71 AT1G15000 127 / 5e-36 serine carboxypeptidase-like 50 (.1) Lus10041339 [exp] 182 / 2e-51 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10037958 [exp] 179 / 1e-50 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 169 / 1e-46 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 160 / 1e-43 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041338 [exp] 133 / 2e-34 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 133 / 3e-34 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129800 [exp] 505 / 1e-177 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 498 / 6e-175 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.005G060100 [exp] 486 / 3e-170 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G034800 [exp] 180 / 7e-51 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 179 / 2e-50 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 178 / 2e-50 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.009G056000 [exp] 145 / 2e-38 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G055900 [exp] 144 / 8e-38 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.001G261100 [exp] 144 / 9e-38 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.010G220200 [exp] 131 / 2e-33 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10041000 pacid=23179970 polypeptide=Lus10041000 locus=Lus10041000.g ID=Lus10041000.BGIv1.0 annot-version=v1.0 ATGGAGTCCACGCCAGCTTTTTCCTTCATCGTCATCCTCTTCTTCCTCTTCCAAACATCTTCTTCTTCTTCTTCGGAACAACCTTTTCCAAAGGAAGCTC TCCCCACCAAATCCGGCTACCTCCCCGTCGACACCACTTCCTCCTCCGCCATGTTCTACTCTTTCTACGAAGCCCAATCATCTCCATCTTCTTCTTCACT AACCCCAATCGTTTTCTGGCTACAAGGCGGCCCAGGCTGCTCCTCCATGATTGGCAACTTCTTCGAGCTCGGCCCATATCTCGTCACTCCTCATCCTGAC CTCCGCCTCAAACCAAACCCAGGCTCCTGGAATCGCATCTTCGGCCTGGTCTTCCTTGACAACCCAATCGGCGCCGGATTTAGCATCGCCTCCACGCCAC AACACATCCCTACCGACCAATTCACCGTCGCCTCCCACCTCTTCTCCGCCATCTCCGCCTTCCTCCGCCTCCTCCCTCCCGGTTCTGCCTCCCGCCCTCT TTACATCGCCGGCGAGAGCTACGCTGGTAAGTACGTCCCCGCAATCGCCTCCTACATACTCAACCACAACGCCAATTTGACGAATCCCGAATTAGCCGTA AATTTGAAAGGGATTGCCATCGGGGACGGGCTGACCGACCCGGTAATCCAAGTCCAGACCCACTCGCTGAACGCCTACTACTCCGGCCTAATCAACGACC GCCAGAGGGAGGAATTGGAGAGGCTGCAATCGGAGGCGGTTCGGCTTGTAGGGATGATGAAGTGGAAAGAAGCCACGGAAGCGAGGAACAAGGTACTGAA CACGCTGCAGAACATGACGGGGTTAGCCACTCTATACGATTTCACCAAGCTCAAACCCTACCGGACGGATCTGGTAACGGAGCTGATGAATCGTCCGGGA GTGAAGGCGGCGTTGAACGCCAACGCTTCGGTGAAGTTTGAGGAGTGCGGGGAAGCGGCAGGGGACGCGCTGCACGAGGACGTGATGAAGAGCACGAAGC CGCTGGTGGAGGAGATACTAGTGGCGGGGAAGGAGAGATGTAAGGTGTTGTTGTATCAAGGACAGCATGATCTTAGAGACGGGGTAGTGTCGGTGGAGGC TTGGGTGAAGACGATAAGACGATGGGATGGGTTGCCGGAGTTTATGGATGCGAGGAGGGAGGTATGGGAATCGGAGGATGGATTGGTGGCTGGGTATGTG CAGCGGTGGGGGAGTCTGACTCAGGCGGTGGTTCTTGGTGCTGGACACCTTGTTCCGGCAGACCAGCCGATTAACAGTCAAGCCATGATTGAAGGATGGA TTTTAGAGACGGGAGCCTTTGGTGCTTCTTCTCCTTCTGCAGCTAAGCCTAACTATTCCAGGTGGAAAATCCGATAG
AA sequence Show only first row Show all	>Lus10041000 pacid=23179970 polypeptide=Lus10041000 locus=Lus10041000.g ID=Lus10041000.BGIv1.0 annot-version=v1.0 MESTPAFSFIVILFFLFQTSSSSSSEQPFPKEALPTKSGYLPVDTTSSSAMFYSFYEAQSSPSSSSLTPIVFWLQGGPGCSSMIGNFFELGPYLVTPHPD LRLKPNPGSWNRIFGLVFLDNPIGAGFSIASTPQHIPTDQFTVASHLFSAISAFLRLLPPGSASRPLYIAGESYAGKYVPAIASYILNHNANLTNPELAV NLKGIAIGDGLTDPVIQVQTHSLNAYYSGLINDRQREELERLQSEAVRLVGMMKWKEATEARNKVLNTLQNMTGLATLYDFTKLKPYRTDLVTELMNRPG VKAALNANASVKFEECGEAAGDALHEDVMKSTKPLVEEILVAGKERCKVLLYQGQHDLRDGVVSVEAWVKTIRRWDGLPEFMDARREVWESEDGLVAGYV QRWGSLTQAVVLGAGHLVPADQPINSQAMIEGWILETGAFGASSPSAAKPNYSRWKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	0	1
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	2.8	0.9623
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	5.7	0.9682
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	6.4	0.9706
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10017212 [exp]	7.1	0.9552
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	7.7	0.9670
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	8.1	0.9671
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	10.2	0.9536
AT1G71870			MATE efflux family protein (.1...		Lus10038987 [exp]	10.9	0.9386
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	13.4	0.9653
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	13.7	0.9570

Compare expression of checked genes

Lus10041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.