Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08410 129 / 2e-38 FTRA2 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) AT5G23440 119 / 8e-35 FTRA1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013448 [exp] 277 / 2e-97 AT5G08410 130 / 5e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002200 [exp] 112 / 6e-32 AT5G08410 103 / 3e-28 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) Potri.010G255500 [exp] 103 / 1e-28 AT5G08410 78 / 4e-18 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0610 [flax] [poplar] ETAP PF02941 [flax] [poplar] FeThRed_A Ferredoxin thioredoxin reductase variable alpha chain
Representative CDS sequence Show only first row Show all	>Lus10041002 pacid=23179796 polypeptide=Lus10041002 locus=Lus10041002.g ID=Lus10041002.BGIv1.0 annot-version=v1.0 ATGAGTTTTTGTGCATCCTCCTCCTCCACTGCCGCCGCCGCCGTTCTTGGCCTTCTGCCTTCTCCCCGCCCTACTACTCGAATCCTCCCGCCACTCTCCT CAACCCATCCTTCTGTTTGGAAGCATAATCGGAAGCTGGTGGTGTCATGCGAAGTGGCCGTCCGGTCATCGAACGAATCCTCCGCCAAATCGGATCCCCA ACAGCAAGAAGAGCAGCATAAGATTGGAGCGAGGGTGAGGGTGAAGGTGCCGCTGAAGGTGTACCATGTGCCTAAAGTGCCGGAGGTGGATCTGACTGGC AAAGAAGGCAAGATCAAGCAGTTCGTCGGGGTTTGGAAGGGCAAGCAAATCTCCGCCAATCTCCCTTACAAGGTGGAATTCTTGCTGGACATTGAAGGTC GAGACGCGCCTGTCAAGCTATTCGCCCATCTCCGGGACGATGAGTTCGAGTACCTTGATTGA
AA sequence Show only first row Show all	>Lus10041002 pacid=23179796 polypeptide=Lus10041002 locus=Lus10041002.g ID=Lus10041002.BGIv1.0 annot-version=v1.0 MSFCASSSSTAAAAVLGLLPSPRPTTRILPPLSSTHPSVWKHNRKLVVSCEVAVRSSNESSAKSDPQQQEEQHKIGARVRVKVPLKVYHVPKVPEVDLTG KEGKIKQFVGVWKGKQISANLPYKVEFLLDIEGRDAPVKLFAHLRDDEFEYLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	0	1
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	2.2	0.9278
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	4.2	0.9370
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	4.9	0.9360
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	5.3	0.9247
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	7.3	0.9085
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	8.7	0.8974
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	8.9	0.9297
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	10.7	0.8850
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	11.6	0.9210
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	11.7	0.9218

Compare expression of checked genes

Lus10041002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.