Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 928 / 0 Pyruvate kinase family protein (.1) AT5G63680 919 / 0 Pyruvate kinase family protein (.1) AT5G56350 824 / 0 Pyruvate kinase family protein (.1) AT4G26390 804 / 0 Pyruvate kinase family protein (.1) AT3G04050 738 / 0 Pyruvate kinase family protein (.1) AT3G55650 707 / 0 Pyruvate kinase family protein (.1) AT3G25960 704 / 0 Pyruvate kinase family protein (.1) AT3G55810 656 / 0 Pyruvate kinase family protein (.1) AT2G36580 403 / 9e-136 Pyruvate kinase family protein (.1) AT3G52990 400 / 7e-135 Pyruvate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017364 [exp] 956 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 945 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 851 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 843 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 750 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 732 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 589 / 0 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10013450 [exp] 421 / 1e-147 AT5G08570 356 / 1e-122 Pyruvate kinase family protein (.1) Lus10035581 [exp] 388 / 6e-130 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002500 [exp] 954 / 0 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 953 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 832 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 829 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 785 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 776 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G027100 [exp] 391 / 3e-131 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.006G117400 [exp] 391 / 4e-131 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 382 / 1e-127 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 285 / 2e-89 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10041003 pacid=23179901 polypeptide=Lus10041003 locus=Lus10041003.g ID=Lus10041003.BGIv1.0 annot-version=v1.0 ATGGCTAACATTGATATCGAGGGCCTCCTCCGGGGCGACGACGAAGTTGACGAAGGTCGTGTCCCCAAGACCAAAATCGTATGCACTCTAGGTCCTGCCT CTAGATCTGTCCCCATGATCGAGAAGCTTCTCAGGGCTGGCATGAACGTCGCCCGCTTCAATTTCTCCCATGGCTCCCACGATTACCACCAGGAGACCTT GGACAACCTCCGCATCGCCATGCATAATACCAGCATCCTCTGTGCTGTCATGCTCGACACCAAGGGACCAGAGATTCGAACCGGATTCCTCAAGGATGAG AAGCCAATCCAACTCAAAGAGGGCCAAGAAATTACCATCTCTACTGACTACACCATCAAGGGAAATACGGAGACGATCTCCATGAGCTATAAGAAGCTTC CCCTGGATGTGAAACCTGGCAACACTATCTTGTGTTCCGACGGCACCATCTCCCTCACCGTACTATCCTGTGATCCAAAGGCTGGAACCGTCAGATGCCG CTGTGAAAATTCTGCCGTGCTCGGCGAGAGGAAAAATGTCAATCTACCGGGGGTTGTGGTGGATCTCCCTACTCTCACTGACAAGGACAAGGAAGACATC CTTCAATGGGGTGTTCCTAACTCCATCGATATGATTGCTCTCTCATTTGTCCGCAAGGGCTCAGACCTTGTCAATGTCCGCAAGGTCCTTGGACCCCATG CCAAGAATATCAAGTTAATGTCTAAGGTTGAGAATCAGGAGGGTGTTATCAACTTCGACGAGATATTGCGAGAGACGGATGCATTCATGGTTGCTCGTGG CGATCTTGGAATGGAGATTCCGGTTGAGAAGATATTCCTTGCTCAGAAGATGATGATATACAAGTGCAACCTCGTGGGGAAGCCGGTGGTGACTGCTACT CAGATGCTCGAGTCCATGATCAAGTCACCGCGTCCGACTCGTGCAGAAGCCACCGATGTCGCCAATGCTGTCCTCGACGGTACTGATTGCGTGATGCTGA GCGGGGAGAGTGCTGCCGGCGCGTATCCTGAACTCGCGGTGAAGACCATGCGCAGGATCTGCATAGAAGCCGAATCTTCGCTGGACTACGGGACCATCTT CAAGGAGATGATAAGGGCAACTCCACTTCCAATGAGCCCCTTGGAGAGCCTTGCATCTTCCGCTGTCCGAACGGCAAACAAGGCTAGAGCGAAGCTGATA GTGGTGCTGACACGTGGCGGAACGACGGCCACATTGGTGGCTAAGTACAGGCCGGCGGTGCCAATTCTTTCCGTGGTTGTGCCGGTGTTGACCACCGATT CGTTTGATTGGTCGTGTAGTGATGAGGCGCCAGCAAGGCACAGCCTGATATACCGGGGGCTGATCCCGGTGCTGGCGGAAGGGTCTGCAAAGGCTACTGA TACAGAATCGACTGAGGAGATATTAGCTGCGGCTCTGAGATCAGCGACGAAGAAGGGTCTGTGTAAGGTAGGAGACGCTGTGGTGGCGCTCCATAGGATA GGGACGGCGTCGGTTATCAAGATATGCATGGTGAAGTAG
AA sequence Show only first row Show all	>Lus10041003 pacid=23179901 polypeptide=Lus10041003 locus=Lus10041003.g ID=Lus10041003.BGIv1.0 annot-version=v1.0 MANIDIEGLLRGDDEVDEGRVPKTKIVCTLGPASRSVPMIEKLLRAGMNVARFNFSHGSHDYHQETLDNLRIAMHNTSILCAVMLDTKGPEIRTGFLKDE KPIQLKEGQEITISTDYTIKGNTETISMSYKKLPLDVKPGNTILCSDGTISLTVLSCDPKAGTVRCRCENSAVLGERKNVNLPGVVVDLPTLTDKDKEDI LQWGVPNSIDMIALSFVRKGSDLVNVRKVLGPHAKNIKLMSKVENQEGVINFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTAT QMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKTMRRICIEAESSLDYGTIFKEMIRATPLPMSPLESLASSAVRTANKARAKLI VVLTRGGTTATLVAKYRPAVPILSVVVPVLTTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDTESTEEILAAALRSATKKGLCKVGDAVVALHRI GTASVIKICMVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	0	1
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	1.0	0.9627
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	2.0	0.9600
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	3.5	0.9418
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	4.6	0.9567
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	6.0	0.9539
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	6.9	0.9408
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	7.3	0.9314
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	7.7	0.9539
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	7.7	0.9532
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	9.2	0.9402

Compare expression of checked genes

Lus10041003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.