Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19120 80 / 4e-17 Eukaryotic aspartyl protease family protein (.1) AT1G03220 73 / 1e-14 Eukaryotic aspartyl protease family protein (.1) AT1G03230 72 / 2e-14 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021939 [exp] 304 / 1e-102 AT5G19120 228 / 4e-71 Eukaryotic aspartyl protease family protein (.1) Lus10022958 [exp] 185 / 5e-59 AT1G03230 78 / 3e-17 Eukaryotic aspartyl protease family protein (.1) Lus10039217 [exp] 131 / 1e-38 AT5G19120 78 / 1e-17 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 89 / 5e-20 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 87 / 1e-19 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 85 / 1e-18 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 72 / 2e-14 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 71 / 8e-14 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 68 / 4e-13 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203100 [exp] 125 / 1e-33 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 79 / 6e-17 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 76 / 9e-16 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 73 / 1e-14 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 49 / 2e-06 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 48 / 3e-06 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 48 / 3e-06 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 46 / 9e-06 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 46 / 1e-05 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 42 / 0.0003 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041004 pacid=23179659 polypeptide=Lus10041004 locus=Lus10041004.g ID=Lus10041004.BGIv1.0 annot-version=v1.0 ATGACTTATCTCCCACTTATCATTGTCTTTTGTCTTTCCCTCATTTTCATCCACATCATCCATGCCTCCTCTAATCTCCTTTTACTCCCTGTTGCCAAAG ATCCCACCAATCACCAGTTCACGACCCTAACCCATCACCGTCTCCAACCCATCAAGCCCGTCGTCGATCTCGGCGGCCCTTCTCTCTGGGTCCACGACTC ATCATCTCACCACCTTAATCTCCTTCTCCGCTGCTCAATCCAATGCACCAATGCGAATTCCAACGCCGACCATCTTTCTGATAAAACCGCAGCATGCCAT GTCGAAAACTGTAACGGCATCATCGGGGTTAGATCAAACGGCCAACTCGTGGAAGCCCCCGTCGCCGTCCGATCGATCGACAGGTCAACGGCTACGGTTG ACTGCTTCATCTTCTCTTGCGGGTCCACATTGATGTGGAATGGCCTGACAAGCGGCGCTCTTGGAATGATCGGATTAGGAGGAAGAAAGAGGCAGATCTC CCTGACGGCGCAGTTCGCGGCAGCGTTCGGCTTCCGAAGAAGGAGGTTCGTCATCTGCTTCCGAAATTCTGACGTTGGCGTATTGACGTTCGGTGATTCT CTTGTTGAATCCGTATTCGGAACAGAGATATCAAGGTCTCTGCTTTACACTCCCCTCGTTGCCTCTTCTTCCCCCTCTGACGCCGGATACTTTATCAATC TGAAGTCGATCATAATTGACGACGAGTATTAG
AA sequence Show only first row Show all	>Lus10041004 pacid=23179659 polypeptide=Lus10041004 locus=Lus10041004.g ID=Lus10041004.BGIv1.0 annot-version=v1.0 MTYLPLIIVFCLSLIFIHIIHASSNLLLLPVAKDPTNHQFTTLTHHRLQPIKPVVDLGGPSLWVHDSSSHHLNLLLRCSIQCTNANSNADHLSDKTAACH VENCNGIIGVRSNGQLVEAPVAVRSIDRSTATVDCFIFSCGSTLMWNGLTSGALGMIGLGGRKRQISLTAQFAAAFGFRRRRFVICFRNSDVGVLTFGDS LVESVFGTEISRSLLYTPLVASSSPSDAGYFINLKSIIIDDEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10020453 [exp]	3.3	0.7217
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	12.0	0.6785
AT4G35280	C2H2ZnF	DAZ2	DUO1-ACTIVATED ZINC FINGER 2, ...		Lus10023932 [exp]	12.5	0.5571
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028313 [exp]	16.6	0.5853
					Lus10011613 [exp]	21.5	0.6191
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10009704 [exp]	24.5	0.6703
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10005093 [exp]	32.9	0.6439
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10024776 [exp]	33.2	0.6613
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10023709 [exp]	34.5	0.6217
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	36.3	0.6025

Compare expression of checked genes

Lus10041004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.