Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08415 549 / 0 Radical SAM superfamily protein (.1) AT2G20860 355 / 2e-121 LIP1 lipoic acid synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013451 [exp] 655 / 0 AT5G08415 536 / 0.0 Radical SAM superfamily protein (.1) Lus10031630 [exp] 353 / 2e-120 AT2G20860 581 / 0.0 lipoic acid synthase 1 (.1) Lus10033710 [exp] 209 / 1e-60 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10001348 [exp] 62 / 3e-11 ND 78 / 3e-17
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136000 [exp] 555 / 0 AT5G08415 566 / 0.0 Radical SAM superfamily protein (.1) Potri.019G102700 [exp] 541 / 0 AT5G08415 545 / 0.0 Radical SAM superfamily protein (.1) Potri.007G078400 [exp] 358 / 3e-122 AT2G20860 583 / 0.0 lipoic acid synthase 1 (.1) Potri.005G086200 [exp] 354 / 1e-120 AT2G20860 582 / 0.0 lipoic acid synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10041005 pacid=23179734 polypeptide=Lus10041005 locus=Lus10041005.g ID=Lus10041005.BGIv1.0 annot-version=v1.0 ATGACGACGTTGATGATTCAGCAGCAGTACCTGTCCTCCAATTGTTCCAAGGTTCAGCATCCCGCCCCTACCAACGCCGCCTCTTCCAGCCACTCCTTCC TTCCGATTCGGCTTTCTCATTCCTGGCGAATTAGGGTTGACCTTGCTTCAGGCAGCACCACTTCTTCTTCTTCTTCTTCTTCCGCGGCTGCTCTCGGTCC CTTCACCGGTAGGGATCCGAATGTCAAGAAACCCGAATGGCTACGGCAGAAGGCTCCTCAGGGCCCTCGTTTTGATGAAGTTAAGAAAACGCTCTCCAAG TCCAACCTCAGCACTGTATGCGAGGAGGCACAATGCCCAAACATAGGCGAGTGCTGGAACGGCGGCAGCGACGGGATCTCCACCGCCACCATCATGCTCC TCGGGGACACTTGCACTCGTGGCTGTAGATTTTGTGCAGTCAAAACCAGCAGGAACCCTCCCCCTCCAGACCCCGCCGAGCCCTACAATACCGCTCTGGC TATCGCTTCTTGGGGTGTGGATTACATCGTCTTGACAAGCGTCGATCGTGATGATTTGCCTGATGGAGGTAGTGGACACTTTGCTCGCACCGTTATGGCC CTTAAGGAAGTGAAGCCTGAGATCATGGTTGAGTGTCTGACCTCTGATTTTCGTGGCGACTTGGAGGCGGTGGACACTCTGGTACATTCAGGATTGGATG TCTTTGCCCACAACGTTGAGACTGTGAAACGCCTTCAGCGAATTGTTAGAGATCCTCGTGCAGGGTATGAGCAAAGCTTGAGTGTGTTGAAACATGCTAA GCTGAGCAAGGATGGTATGATAACGAAAACATCTATAATGTTGGGTCTTGGAGAAACTGACGAAGAGTTGAAGGAGACCATGGCTGATTTAAGGGCTATT GGTGTCGATATTCTGACACTTGGGCAGTACTTACAGCCAACTCCACTGCACCTAACTGTGAAGGAGTATGTGACACCTGAGAAGTTTGTCTTCTGGAAGG AATATGGCGAGTCTGTTGGATTCCGTTATGTAGCCAGTGGTCCTCTGGTTCGGTCGTCTTATAGAGCGGGGGAACTGTTCGTGAAGACGATGGTGAAAAG AGACAGGGCTATCGCGGCGGCTGCAGCAACAACAAGCTAA
AA sequence Show only first row Show all	>Lus10041005 pacid=23179734 polypeptide=Lus10041005 locus=Lus10041005.g ID=Lus10041005.BGIv1.0 annot-version=v1.0 MTTLMIQQQYLSSNCSKVQHPAPTNAASSSHSFLPIRLSHSWRIRVDLASGSTTSSSSSSSAAALGPFTGRDPNVKKPEWLRQKAPQGPRFDEVKKTLSK SNLSTVCEEAQCPNIGECWNGGSDGISTATIMLLGDTCTRGCRFCAVKTSRNPPPPDPAEPYNTALAIASWGVDYIVLTSVDRDDLPDGGSGHFARTVMA LKEVKPEIMVECLTSDFRGDLEAVDTLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQSLSVLKHAKLSKDGMITKTSIMLGLGETDEELKETMADLRAI GVDILTLGQYLQPTPLHLTVKEYVTPEKFVFWKEYGESVGFRYVASGPLVRSSYRAGELFVKTMVKRDRAIAAAAATTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08415			Radical SAM superfamily protei...		Lus10041005 [exp]	0	1
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	12.2	0.7658
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	14.5	0.7687
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	14.9	0.7710
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	19.5	0.6981
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	33.2	0.7591
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	41.5	0.6868
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	42.3	0.7496
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	47.2	0.7418
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	50.9	0.7180
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10014889 [exp]	81.2	0.7093

Compare expression of checked genes

Lus10041005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.