Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08390 167 / 1e-48 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 160 / 3e-46 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 159 / 8e-46 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 158 / 2e-45 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013452 [exp] 285 / 1e-89 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011224 [exp] 164 / 2e-47 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 161 / 2e-46 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002300 [exp] 245 / 2e-77 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 229 / 4e-72 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 157 / 3e-45 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041006 pacid=23179641 polypeptide=Lus10041006 locus=Lus10041006.g ID=Lus10041006.BGIv1.0 annot-version=v1.0 ATGAAACCTGGGGTGGTTGAGGCTGTCTATAGATATTGGGAACGGAATGATGTCAAGGGCGCGATCAGTGCAATGGAGAAGATGGCTGATCATGCCGTTC TTGCTGATGTAACCAGTATCATTGCTGAGAAAATTGACATTGTCACGTTGGACATTTGCACATATCTTCTGCCAGTTTTAACGTGTCTTCTCGAGAGCAA AATTGATCGACATTTGAGCATCTCGATGGATTTGCTGCTGACTTTGGTTCGAACATTTGGGACCATGATCTACACAACTGTATCGGCATCTACCACTGTT GGTGTAGACATCGAGGCAGAAAGAAGGTTGGAGCGGTGTAATCTTTGCTTTGTAGAGCTAGAAAAGGTGAAGCGTTGCCTGTCTACGTTCACTAGACGAG GAGGCTCCGTATGGAAGTCTGCACAGGAGTTGAATTTGGCTTTGCAAGAAGTTTCATGA
AA sequence Show only first row Show all	>Lus10041006 pacid=23179641 polypeptide=Lus10041006 locus=Lus10041006.g ID=Lus10041006.BGIv1.0 annot-version=v1.0 MKPGVVEAVYRYWERNDVKGAISAMEKMADHAVLADVTSIIAEKIDIVTLDICTYLLPVLTCLLESKIDRHLSISMDLLLTLVRTFGTMIYTTVSASTTV GVDIEAERRLERCNLCFVELEKVKRCLSTFTRRGGSVWKSAQELNLALQEVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	0	1
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	1.4	0.7782
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	4.8	0.7931
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	8.3	0.7629
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	9.9	0.7026
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	17.8	0.7373
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	18.6	0.7348
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	21.9	0.7129
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	22.2	0.7181
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	23.2	0.6618
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	24.0	0.7217

Compare expression of checked genes

Lus10041006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.