Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23430 709 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 689 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 490 / 2e-159 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 464 / 5e-151 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 115 / 7e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 111 / 1e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 108 / 3e-25 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 108 / 3e-24 TAF5 TBP-associated factor 5 (.1) AT1G62020 107 / 1e-23 Coatomer, alpha subunit (.1) AT2G21390 106 / 2e-23 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013452 [exp] 1167 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018458 [exp] 482 / 3e-156 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 480 / 8e-155 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 116 / 5e-27 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 114 / 2e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 112 / 1e-25 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 108 / 1e-25 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037538 [exp] 111 / 3e-25 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10006916 [exp] 107 / 4e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002300 [exp] 867 / 0 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 771 / 0 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 496 / 1e-163 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 115 / 4e-27 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.006G263400 [exp] 113 / 7e-26 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 111 / 1e-25 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 110 / 5e-25 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.015G069700 [exp] 111 / 6e-25 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.019G087200 [exp] 107 / 7e-25 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G074800 [exp] 110 / 8e-25 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10041007 pacid=23179888 polypeptide=Lus10041007 locus=Lus10041007.g ID=Lus10041007.BGIv1.0 annot-version=v1.0 ATGACTACCAAGCGCTCTTACAAGCTCCGTATCCTTTGCCTGCTTCAATTCACCCATTCCTGTGATCTGCATTTTTACTTTACTTCTCACCCTTTTTATT TATGTTCGTCCTTGCACACGAGGTCTGTCTTCTCCTTGACTAGTTTTTCTTTTCTAGAGGAATTTGTAGCACATTCTTCTGCTGTTAATTGTCTCAAGAT TGGGAGGAAATCCTCTAGGCTTCTTGTCACTGGTGGTGAAGATCACAAGGTTAATCTGTGGTCCATTGGCAAACCCAATGCCTTATTGAGTCTGTCAGGA CATACAAGTGGAATTGATTCGGTTGGTTTTGATTCTTCTGAAGTCTTAGTAGCCGCAGGTGCTGCCAGTGGTACCATCAAACTTTGGGATTTAGAGGAGG CAAAGATTGTCCGTACCCTCACCGGCCACAGATCCAACTGCATTTCTGTGGACTTTCACCCTTTCGGAGAGTTCTTTGCATCTGGTTCCTTGGATACTAA TCTGAAGATATGGGACATCAGAAAGAAGGGCTGTATCCACACTTACAAGGGCCACACTAGAGGAGTCAATGCCATTAGATTTACTCCAGATGGTCGTTGG GTTGTATCCGGTGGAGAGGACAACACTGTCAAGCTGTGGGATCTGACTGCCGGCAAGCTATTGCATGATTTCAAGTGTCATGAGGGCCAAATTCAATGCA TAGATTTCCATCCCCACGAGTTCCTTTTGGCGACAGGATCTGCTGATAAAACTGTTAAATTTTTTGATCTGGAAACCTTTGAATTAATCGGTTCTACTAA TCCAGAGGCATCTGGAGTACGTTGTTTGACCTTTAATCCTGATGGAAGGAACATCCTCTGTGGTTTTCATGAAAGTCTGAAGGTTTTCTCTTGGGAACCA ATTAGATGTCACGATGCTGTTGATGTGGGATGGTCCAAATTGTCAGATCTGCATGTCAATGAGGGAAAACTCCTTGGTTGTTCTTATAATCAAAGCTGTG TAGGAGTATGGGTAGTGGATACCTCGCGCATAGAACCATATGCACTTGGAAATTCTCAGAGATTCAGTAGTCAGGTGGAAAATAAAGCTAGTGCAGCAGG GAATCAATCATTATTGACTGAGAAAACTGCAAAATCAAGTTTGGGAAGAATAACGGTTTCTCAAGGTGCAGATGCATTGGTAAATGAAACCAGGTCGCTT GGTAGATTGTCTGTCTCTTCAAATTCTGATACCGCTAAAGATTTACCAAAGGAGTCAAAGATTTTAGCACCCGTGGGAAGTGTACCTGGTACTCCTCAGA AGGTCAGCTTAAACACTGGCGTGAAAGCGTTGACCAATTCCACATCATTTCCAAGTACTGCAATCGCAAAGAAGAATTTTATCAAAGCGAATCCAGCTGT GAGTGGTCCAGTCCTTAGTAAGGCAGAAGTCATACCTGTTATTGTGCCTAGAACTACTGCAAGGTCGGAACATAGCTCTGATTTGAGAAAGGAGGCTAGT ATCAGTGGAAGATCAATGCCATTTCCGGTGCAGTCAAAGACAACTGATTTTCGAAGGTTCCCAAGTAGTAGTGATGACATGGACCAGCCAACTATCTCTG CCCAGCCTGGTCCTTTGGGAACAAATATGGTAGATAGACCACTTTTTCCTACAGCTAAGCGCTCAATTCATGGAGTTCTGGCTGCTGAAAGAAGTATGAA GGATGAGAGATTGATTGCATCAAGAAGACAAGAATCAAGTTTCGTGGCAGATCTACCTACAACCTATTCTGACGAAACTTATGAGAATCGTGGGCATAAA TTAATTAGGGATGTACCTCCAAATGAAAGCCAAAAAGGAGGAAGAATGCGTCCACTTGTGCTTAATATGGGGAAAAATGGAAGATCAAATTATCAGGGCC ATACATCTGATATTTCACCTGGGCGAGCACCCACAGTTGTGCTCCCTCGTAATAGAGTATGGTTTCCTACTTATATTTTCTATTTCATGTGGCACCATCG TGGTATTTGTCTATAG
AA sequence Show only first row Show all	>Lus10041007 pacid=23179888 polypeptide=Lus10041007 locus=Lus10041007.g ID=Lus10041007.BGIv1.0 annot-version=v1.0 MTTKRSYKLRILCLLQFTHSCDLHFYFTSHPFYLCSSLHTRSVFSLTSFSFLEEFVAHSSAVNCLKIGRKSSRLLVTGGEDHKVNLWSIGKPNALLSLSG HTSGIDSVGFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADKTVKFFDLETFELIGSTNPEASGVRCLTFNPDGRNILCGFHESLKVFSWEP IRCHDAVDVGWSKLSDLHVNEGKLLGCSYNQSCVGVWVVDTSRIEPYALGNSQRFSSQVENKASAAGNQSLLTEKTAKSSLGRITVSQGADALVNETRSL GRLSVSSNSDTAKDLPKESKILAPVGSVPGTPQKVSLNTGVKALTNSTSFPSTAIAKKNFIKANPAVSGPVLSKAEVIPVIVPRTTARSEHSSDLRKEAS ISGRSMPFPVQSKTTDFRRFPSSSDDMDQPTISAQPGPLGTNMVDRPLFPTAKRSIHGVLAAERSMKDERLIASRRQESSFVADLPTTYSDETYENRGHK LIRDVPPNESQKGGRMRPLVLNMGKNGRSNYQGHTSDISPGRAPTVVLPRNRVWFPTYIFYFMWHHRGICL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	0	1
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	1.4	0.9451
AT5G40740			unknown protein		Lus10032081 [exp]	2.4	0.9292
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	3.0	0.9344
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Lus10039199 [exp]	4.9	0.9335
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	5.7	0.9265
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	7.2	0.9069
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	7.2	0.9404
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	7.5	0.9185
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	8.4	0.9271
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	9.5	0.9237

Compare expression of checked genes

Lus10041007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.