Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50410 1035 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 947 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G61140 780 / 0 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 722 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G16600 484 / 8e-160 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G22750 342 / 1e-101 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 345 / 3e-101 Helicase protein with RING/U-box domain (.1) AT1G05120 293 / 2e-85 Helicase protein with RING/U-box domain (.1) AT1G02670 274 / 5e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G05130 275 / 1e-78 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013452 [exp] 1706 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011211 [exp] 819 / 0 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 492 / 1e-156 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10043365 [exp] 347 / 5e-103 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 317 / 4e-94 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 313 / 7e-91 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 275 / 1e-77 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10027296 [exp] 130 / 3e-32 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 116 / 9e-29 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000700 [exp] 1214 / 0 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 866 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 850 / 0 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.004G189400 [exp] 335 / 5e-99 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 326 / 3e-97 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 325 / 2e-96 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 283 / 9e-82 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G033800 [exp] 278 / 4e-80 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 245 / 3e-68 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 237 / 2e-65 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041008 pacid=23179811 polypeptide=Lus10041008 locus=Lus10041008.g ID=Lus10041008.BGIv1.0 annot-version=v1.0 ATGAATGCCATCGCTGGGAGGGGACTTTCACCTCTTGGCCATGCTCTTAATAACTTCTCTGAGGTAAGGGATCGTGATCTGGTTGAAGCAAGGGGCATTC CCTGTCTGATTGCAATGGCTGCAAAGCAGCCTATAGATATAAGTTCTGATAGTGATCTGGGGCTGGATGATGATGATGACGACTTGGACATTAGTGAATC TCTAAGACAGGGTTCTAATAATAAGCGGATTCTTCCTCAGTGGGAGACAGGCACAAGTAGTGCAGGGGCCGTCAGACAAAATGGTAATGCTGGTAGCCTG AGATCTGGTAACTCTAGGATTGCTAATGTTTCTGGTGGCGAGCAAGCTTTGAAGCGGACCCTTCCAATGTCTCTGGATGGAGCTGCACCAAATTACAAGA TGAACAGGTTAGCTGATAATGCAGCTAGCAGCCAGACACATGGTGTTCATCGCAATGTCTACAATCCCTCAGTAGCAGGGAGGAGCCAGGAATACACTCA CGGCCCCTACAGCCATGTTGGTAATGAAGACGTTATGATGTATGAAAAAAATGGAGGCAGGGCTCTTCCTCAGTCATGGACGCATGTTAAGTCTACCTTG CCTGTGCATTTGGCTGGTTCAAGTGACCATGGATACGCTTCCATGGTAGGTGATGAAAGAACTGCTGAATGTGATGAGAGGTTAATCTATCAAGCAGCAC TACAGGGTATTAATCAACCAAAGATGGAAGCCAACTTACCTGAAGGTTTATTATCTGTGCCTCTTCTGAAACACCAGAAAATTGCATTGGCGTGGATGCT TCAGAAGGAGATGAGAAGCTTACACTGTTTAGGTGGAATTTTAGCTGATGATCAGGGTCTTGGGAAAACTATATCAATGATTGCCCTTGTACAGATGCAG AAGTATTTGGAGTTGAAATCTAAGTCAGAAGATCAAAATGCAAGAAATACTGAAGCACTGAATTTGGATGACGATGATGATTGCAGCACTGTTGCCTCAG ATAAAATGAAACAGTCAGCTGAAATTAAGGATACCGTAATAACTGAACAAGTAAATACTTCACAGGCACTGATTAGAAGGAGACCTGCTGCTGGTACATT GGTTGTGTGCCCAGCAAGTGTTCTCCGCCAGTGGGCTAGGGAGTTGGATGATAAAGTTGCGGAAAAGTCTAAACTGTCCGTCTTGATATACCACGGAGGT ACGAGAACAAAAGATCCTGTTGAATTGGCAAAGTTTGATGTCGTTATGACGACATACGCCATAGTAACTAATGAACTTCCCAAGCAACCTTTGGTTGATG ATGATGAACTTGATGACAAAACTGCAGAGAAAAGTGCTCTGTCTTCTGCATTTTCAGTTGATAAGAAGGGGAAAAAGCTGCTTGGTACCAGCAAGAAGAG GAAGAAGGGCACAAAGGGATCAGATTTCTCTTCTCTTGATTATGATTGTAGTCCACTTGCAAGGGTGGGTTGGTGTAGGGTGATTCTAGATGAAGCTCAA ACAATAAAAAATCATCGAACCCAAGTGGCCAGGGCTTGCTGTAGCCTTCGTGCTAAGAGGAGATGGTGCCTATCTGGAACACCTATACAAAATTCTATTG ATGATTTGTACAGCTATTTCAGATTTCTCAGATATGAACCATACTCGGGGTACAAATCATTTTGCAGTGCCATAAAGCTCCCAATATCTAGAAATTCACT TCATGGCTACAAGAAGCTGAGAGCAGTTTTAGCAGCAGTAATGCTGCGCCGTACTAAAGGGACATTGATAAATGGGGAGCCTATAATCAGATTGCCTCCA AAATCAATATGTTTGAGGAAGGTGGATTTCTCGATCGAGGAGCGGGCTTTCTACACCCAGCTAGAAGCTGATTCGCGTTCTAAGTTCAAGGCTTATGCTG CTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGACCACCCAGTTCTTGTCAAAGGTTTTAATTC CAACTCTGTACAAAAAGTATCAGTGGATATGGCAAATAAACTTCCAAAGGAGATGGTGATGGATCTCTTAAGTAGACTGACTACTTCTCTGACTATTTGC CGTGTATGCACTGATCTGCCCGAGGACCCTGTTGTTACAATGTGCGGTCATGTTTTCTGTTATCAGTGTGTGTCAAATTACTTGGCCGGGGATGATAACA CCTGCCCTGGTCCTGATTGCAAAGAACAGCTTGGTGCTGATATTGTCTTCTCGGAAGCTACGTTGAGAAGTTGCATGTCTAACAATGGTGATGCAGGTCG TTCTCGATCCAACTTTGATGAGATAATGGAGAGCGAGTATAGCTCTTCAAAAATCAGAGCTATCCTTGAGATTCTTTTCTCACATAGTGAAATGAGTGAA CCTGATGTTGTAGAGTGCACAGTTGTGAGCTCTGTTCCTAAAGGACCTATAAAAACGATAATTTTTTCACAATGGACTGGCATGTTGGACTTGGTTGAGC GCTCGCTGAAAGAGACTGGCCTAGCGTATAGGAGACTTGATGGCACAATGAGTTTAAATGTGAGAGACAAGGCTGTCAAAGATTTCAATACAAATCCCGA GGTAACGGTAATGCTGATGTCACTCAAGGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCACGTTATCCTTCTGGATCTTTGGTGGAATCCAAGC ACAGAAGATCAGGCAGTTGACAGAGCACATAGAATCGGACAGACTCGGCCAGTTACTGTAACCCGGCTCACCATTGCAGACACTGTGGAGGATAGGATAC TAGCTTTGCAGGATGAGAAGAGGAAAATGGTTTCGTCAGCTTTTGGTGAAGACCAAAGTGGGGGGACAGCTACACGGCTTACAGTGGAAGATCTAAGATT TCTGTTCATGGACAGGGATGGGACCCGCTGA
AA sequence Show only first row Show all	>Lus10041008 pacid=23179811 polypeptide=Lus10041008 locus=Lus10041008.g ID=Lus10041008.BGIv1.0 annot-version=v1.0 MNAIAGRGLSPLGHALNNFSEVRDRDLVEARGIPCLIAMAAKQPIDISSDSDLGLDDDDDDLDISESLRQGSNNKRILPQWETGTSSAGAVRQNGNAGSL RSGNSRIANVSGGEQALKRTLPMSLDGAAPNYKMNRLADNAASSQTHGVHRNVYNPSVAGRSQEYTHGPYSHVGNEDVMMYEKNGGRALPQSWTHVKSTL PVHLAGSSDHGYASMVGDERTAECDERLIYQAALQGINQPKMEANLPEGLLSVPLLKHQKIALAWMLQKEMRSLHCLGGILADDQGLGKTISMIALVQMQ KYLELKSKSEDQNARNTEALNLDDDDDCSTVASDKMKQSAEIKDTVITEQVNTSQALIRRRPAAGTLVVCPASVLRQWARELDDKVAEKSKLSVLIYHGG TRTKDPVELAKFDVVMTTYAIVTNELPKQPLVDDDELDDKTAEKSALSSAFSVDKKGKKLLGTSKKRKKGTKGSDFSSLDYDCSPLARVGWCRVILDEAQ TIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYEPYSGYKSFCSAIKLPISRNSLHGYKKLRAVLAAVMLRRTKGTLINGEPIIRLPP KSICLRKVDFSIEERAFYTQLEADSRSKFKAYAAAGTVNQNYANILLMLLRLRQACDHPVLVKGFNSNSVQKVSVDMANKLPKEMVMDLLSRLTTSLTIC RVCTDLPEDPVVTMCGHVFCYQCVSNYLAGDDNTCPGPDCKEQLGADIVFSEATLRSCMSNNGDAGRSRSNFDEIMESEYSSSKIRAILEILFSHSEMSE PDVVECTVVSSVPKGPIKTIIFSQWTGMLDLVERSLKETGLAYRRLDGTMSLNVRDKAVKDFNTNPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPS TEDQAVDRAHRIGQTRPVTVTRLTIADTVEDRILALQDEKRKMVSSAFGEDQSGGTATRLTVEDLRFLFMDRDGTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50410			SNF2 domain-containing protein...		Lus10041008 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	1.0	0.9188
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	3.5	0.8787
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	5.8	0.9030
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	6.9	0.8835
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	7.7	0.8777
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	8.8	0.8848
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	10.4	0.8590
AT2G24530			unknown protein		Lus10026942 [exp]	10.7	0.8725
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	11.0	0.8236
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	12.0	0.8860

Compare expression of checked genes

Lus10041008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.