Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23420 134 / 2e-38 HMGB6 high-mobility group box 6 (.1.2) AT3G51880 86 / 1e-20 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20696 82 / 2e-19 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT2G17560 81 / 4e-19 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT1G20693 81 / 4e-19 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT4G35570 81 / 4e-19 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 71 / 2e-15 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23405 50 / 8e-08 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT4G11080 49 / 1e-06 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 47 / 4e-06 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013453 [exp] 251 / 1e-83 AT5G23420 160 / 5e-48 high-mobility group box 6 (.1.2) Lus10012252 [exp] 86 / 3e-21 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 86 / 7e-21 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10030738 [exp] 83 / 2e-19 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 84 / 2e-18 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10040192 [exp] 80 / 4e-18 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 79 / 9e-18 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 78 / 5e-17 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10025391 [exp] 72 / 2e-15 AT2G34450 137 / 8e-42 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000900 [exp] 161 / 3e-49 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.010G189900 [exp] 84 / 6e-20 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G101400 [exp] 81 / 4e-19 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 81 / 7e-19 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 74 / 2e-16 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 74 / 3e-16 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.004G131400 [exp] 66 / 3e-13 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.001G093700 [exp] 51 / 3e-07 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 47 / 7e-06 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10041009 pacid=23180038 polypeptide=Lus10041009 locus=Lus10041009.g ID=Lus10041009.BGIv1.0 annot-version=v1.0 ATGGCAGGAGGTGGCAGCAGGCAGTCCAACCCAACTAAGGCGAGAAAGAGAGTGGAGGCGGAAAGTAGTGCTTCTGCTGCTTCCTTGGTTCGTGCCAGAG ACGGAAGCGCATTTGCTCGCTGCGAAGAATGCAACAAGGACGTGCCAGCAGCTCTAATCAGTTTTCATAACTGCAGCCTCGACGCCAAAATCAAGATGAA TCTCGAGACTCAAGTCGTTGAGAACGCCACTGAGGTTAAGAAGACTAAGAAGAAAGCATCTGAAAAAAACAGTGAAGAATCGGGAGAACCGAAACCAAAA AGATCCAAGAAAGAGAAGGAGGCTGCCAAAGATCCGAATAAGCCCAAACGCCCTCCCACTGCCTTCTTTATCTTCATGGCTGACTTCAGGAAAACATACA AGGAGGCAAATCCCGACTGTAAGGAGGCTAAGAAGGTCGCCAAGAATGCTGGTGAGAAATGGTCATCCATGACTGAAGACGAGAAGAAACCGTACATCGA AAAGGCTGCTCAGCTCAAGGCTGATTTTGCCAAGGGTTCTAGTAGCAGCGATGCTGAAAACAGGGAAAGTAACAGTGGGGATGACGGTGATGCTGATGAA TCAAACAAGGAAGAAGCTGATGAATCAAACGAGGATGCTGATGAATCAAACAAGGATGAAGCTGATGAAACAAACAAGGTGGATGCTGAGTTGTCCAACA AAGAAGATGCTGAGGATTCAAAGAAGGAAGATCCTGAGGCTGAATCAGCCGGTCCGGAGTAG
AA sequence Show only first row Show all	>Lus10041009 pacid=23180038 polypeptide=Lus10041009 locus=Lus10041009.g ID=Lus10041009.BGIv1.0 annot-version=v1.0 MAGGGSRQSNPTKARKRVEAESSASAASLVRARDGSAFARCEECNKDVPAALISFHNCSLDAKIKMNLETQVVENATEVKKTKKKASEKNSEESGEPKPK RSKKEKEAAKDPNKPKRPPTAFFIFMADFRKTYKEANPDCKEAKKVAKNAGEKWSSMTEDEKKPYIEKAAQLKADFAKGSSSSDAENRESNSGDDGDADE SNKEEADESNEDADESNKDEADETNKVDAELSNKEDAEDSKKEDPEAESAGPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	0	1
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	1.0	0.9614
AT4G16807			unknown protein		Lus10010996 [exp]	1.4	0.9584
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	2.4	0.9316
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	3.9	0.9495
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	5.0	0.9383
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	5.3	0.9407
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	6.6	0.9056
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	9.4	0.9288
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	10.4	0.9006
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	10.5	0.9191

Compare expression of checked genes

Lus10041009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.