Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23400 512 / 5e-177 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 216 / 7e-64 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 211 / 1e-61 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 197 / 7e-57 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 174 / 2e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 172 / 1e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 166 / 3e-45 Leucine-rich repeat (LRR) family protein (.1) AT4G36180 169 / 3e-44 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 166 / 2e-43 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G01890 166 / 2e-43 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041013 [exp] 963 / 0 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 885 / 0 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 202 / 2e-58 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 165 / 9e-45 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033384 [exp] 167 / 6e-44 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037955 [exp] 162 / 1e-42 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10013968 [exp] 161 / 7e-42 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10035429 [exp] 161 / 1e-41 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019067 [exp] 159 / 5e-41 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001000 [exp] 523 / 0 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 208 / 2e-59 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 209 / 4e-59 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 184 / 8e-51 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G098900 [exp] 173 / 6e-48 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 169 / 3e-46 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 167 / 6e-44 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.003G117500 [exp] 164 / 4e-43 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 162 / 3e-42 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G261900 [exp] 160 / 1e-41 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041010 pacid=23179706 polypeptide=Lus10041010 locus=Lus10041010.g ID=Lus10041010.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTCTTGCTATTCATCGTCCTCTACCTCTTCCTCCTTAACAACAATGCCACTGCTCAACAACCTTCATCCGACAGGCTGGCACTTCTCCGGT TCAAAGCAGCAATTCTCCAGGACACTACTGGCACACTCTCCTCCTGGGTCGGCAACACAATCTCCGACTGGGAAGGCGTCCAATGCGATCCGTCAACCGG AAAGGTCTCTTCTTTGATTCTCCAAGCTCCGCCGGACGACGTCACTTCCTACATGAAAGGCACACTCTCTCCGTCACTCGGCAAGCTCACTTCTCTGGAG ACTCTGGTCATCACTGGTATGAAACACATTTCAGGTTATATTCCTCAATCCATCTCCAACCTCCCTCGCCTCGCGAATCTCGTCATCGAAGATGCTTCCC TCCAAGGCTCCATCCCTCCATCTCTAAGCCGTCTCTCCGGTCTGACGTCACTCTCCCTCGCTGGCAACCGCTTGATGGGCCCCATCCCTCTCGCCATTTT CAGCCTTCCCAAACTCCAGCTCCTCGGTTTAGCCAGGAATTCTTTCACCGGCCGTATTGTCATTCCGGCAGCACATCTTCCTTTGCAGTCTTTGGATCTT AGCCACAACCAACTTTCCGGATCCATTCCGGGCAATCTCCTTTCTGCATTCCCAAACCTCACTTCACTTGACCTCTCTTATAACCTCTTCTCCGGCCAGC TCCCCACTTCTCTGTTTACTACTTCATCAACCCTGCAAGACATCTCCTTGGACCATAACCAACTCTCTGGAAGCCTCCCCATTAGCTTCACTGGTCTTAA ATCACTTACTCGTCTCTCCCTGAGCTCCAACCGCCTCATGGGACCGATCCCGCTTTCGATTTCGAGCTTGCAAAAGCTCTGGTATCTTAACATTTCCAGC AATGCCTTCTCCGGACCATTCCCTGCCATTACCGTTACAGGGCTTCCTTCGTTGTTGTCAGTTGACCTGTCATACAACGACTTTAGTATGGTGACCGTAC CAGACTGGATCAGAAATAGACAGCTTACAGATATCCGCCTAGCTGGCTGCAAACTGAGGGGGAGACTTCCTGTATTCACCAGACCAGAATCTCTCACCTC CTTAGACCTATCCGACAACTTCTTTGACAGCTTATCCCCCGGCTTCCTAACCAATGCCTCCACCTTGGAGAATATAAACCTGTCGCGAAACCAGCTCAGG TTCGACCTCTCGGAGTTGAGATTGCCGCAGATGGTCTCTTCTCTTCACATCCAGTCCAACCACATCACTGGCTCTCTTTCCGCTGTACTCAACAGCAGGT TCCTGAAGATCCTCAATGCTGCAAGCAACCAGATCGCAGGAGGGATACCGGTCTCGATCTCGAAGCTGCAACAGCTGAGTAGGCTGGATATAGGGAGGAA CCGTGTAACGGGATCGATTCCATCGAGCATCGGGATGCTGTCGAAACTGGAGTGGCTTGATGTCTCGGGGAATATGTTGACAGGTGGAATCCCAAGTAGC TTGCTGAATGTGAAGAGTGTGAGGCATGTAAACTTCAGGGGGAACAGACTGTGTGGAGAGATCCCTCAAGGAAGGCCTTACAACATCTTCCCTGCAAGTG CTTATGCTCACAATCTATGCCTCTGCGGTAAGCCCTTGCCAGCTTGTAAGTGA
AA sequence Show only first row Show all	>Lus10041010 pacid=23179706 polypeptide=Lus10041010 locus=Lus10041010.g ID=Lus10041010.BGIv1.0 annot-version=v1.0 MKKLLLFIVLYLFLLNNNATAQQPSSDRLALLRFKAAILQDTTGTLSSWVGNTISDWEGVQCDPSTGKVSSLILQAPPDDVTSYMKGTLSPSLGKLTSLE TLVITGMKHISGYIPQSISNLPRLANLVIEDASLQGSIPPSLSRLSGLTSLSLAGNRLMGPIPLAIFSLPKLQLLGLARNSFTGRIVIPAAHLPLQSLDL SHNQLSGSIPGNLLSAFPNLTSLDLSYNLFSGQLPTSLFTTSSTLQDISLDHNQLSGSLPISFTGLKSLTRLSLSSNRLMGPIPLSISSLQKLWYLNISS NAFSGPFPAITVTGLPSLLSVDLSYNDFSMVTVPDWIRNRQLTDIRLAGCKLRGRLPVFTRPESLTSLDLSDNFFDSLSPGFLTNASTLENINLSRNQLR FDLSELRLPQMVSSLHIQSNHITGSLSAVLNSRFLKILNAASNQIAGGIPVSISKLQQLSRLDIGRNRVTGSIPSSIGMLSKLEWLDVSGNMLTGGIPSS LLNVKSVRHVNFRGNRLCGEIPQGRPYNIFPASAYAHNLCLCGKPLPACK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	0	1
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	1.4	0.7989
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	4.2	0.7479
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	10.2	0.7393
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10023885 [exp]	15.9	0.7072
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	19.4	0.7171
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	27.5	0.7437
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	28.9	0.7207
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10032043 [exp]	38.9	0.7312
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10003933 [exp]	54.0	0.6672
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	61.4	0.7097

Compare expression of checked genes

Lus10041010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.