Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 601 / 0 unknown protein AT5G02940 124 / 3e-29 Protein of unknown function (DUF1012) (.1) AT5G43745 115 / 1e-26 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041014 [exp] 906 / 0 AT5G49960 749 / 0.0 unknown protein Lus10013455 [exp] 822 / 0 AT5G49960 936 / 0.0 unknown protein Lus10035805 [exp] 645 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 642 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10039407 [exp] 123 / 4e-29 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G128100 [exp] 746 / 0 AT5G49960 927 / 0.0 unknown protein Potri.019G097000 [exp] 727 / 0 AT5G49960 907 / 0.0 unknown protein Potri.003G008800 [exp] 641 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 628 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.008G160700 [exp] 133 / 3e-32 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 124 / 2e-29 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10041011 pacid=23179790 polypeptide=Lus10041011 locus=Lus10041011.g ID=Lus10041011.BGIv1.0 annot-version=v1.0 ATGGATGCGGAATCATCCTCCATTACGCCGCCGTCTCCACTTCCACCTACTACCAGCAGCAGGGACTGGTTCTTTCCTTCTCCTTCCACTTTCGTCAACC CAGATTACCCGCTTCGTGCTCGCAGCCGCAGGTTCTCTACTACACTCCCCAGAGCATCCTCTTCCTCCTCCTCCCCCACTTCTGCTCCTCCTTATCCAAG GTTCCGCCGCCGCCGCCAAGTTCACTTCCCTCACCATCTCTCCCCTAAGCCCGAACACGGTATTGCCGTTTCGTCTTCTGCTCCACTTCCGCAGGAAGAA GCTGTTCATACTCACGCCGAGACCACCACCGCTCTAAGGAAGAAACCGTGTGCTCGGTTCACATACTTTGGGCTTCAACTGCCTACTTGGTTTACGCGAT GGCATTTCGCCGTTTCTGCATCGTTTCTGATAACAATTCTGGCTTCTTTGATGCACAAGAATTTCTCTTTGCGTAATCAGGTCATTGACTTGCAGGTATC TGTTTCAAAGGCCCGTGCCATAATTGTGATTGCTGAGGACGGAAATGCTGACCAGAGTGATGCTCGTGCATTGAGAACAGTCTTGAGTCTAACAGCAGTT AGAAAAGGACCAAGGGGACATATTATCGTGGAGTTAAGTGATCTTGACAATGAGGTCCTTGTGAAACTTGTTGGTGGAGATCTTGTAGAGACGGTTGTTG CACATGATGTAATTGGCCGGCTGATGATTCAATGGGCTCGACAGCGAGGATTGGCACAGTTTATGCTCATTGTTACCAATGATCCACGGCAGATTTGGGA AGACATCCTTGGGTTCGAAAATTGTGAGTTTTACATCAAGAGATGGCCACAGTTAGACGGCTTGCAGTTTGAGGATGTCTTGATCAGCTTTCCTGATGCT ATACCCCATGGGGTCAAGGTTGCTTCTTGCGGTGGTAAGATTGTCTTGAATCCTGACGATTCGTACACTCTACAAGAAGGTGACGAAGTGCTTGTTATAG CAGAAGATGATGATACTTACGCTCCAGCAGCAGTACCCACGGTATGGAGGGGAAGTCTGCCCAAAGACTTCAATGTGCCAAAGTCTGCAGAAAGGATACT GCTGTGTGGTTGGAGAAGAGATATGGAAGATATTATCATGGTAAAGCTACAGAAAGTCAATCTGATGAACCTCTTGGTGCAAGAAAGTGGTGGCAGATAT CTCCGAATTTCTCGTGCTGCGTTGGATGCTTTTCTTGCACCTGGTTCTGAGCTCTGTATGTTCAATGATGTTCCTGAGAATGAGAGGGAAAAGAAGCTTA TTGACGGTGGTCTTGACATCAGTAGGCTGGTGAATATATGTTTGGTTAACAGAGACGGAAATGCAGTTATTAGGCGACACTTGGAAAGCCTTCCCCTTGA ATCTTTCGATTCGTCGGTTGAAGATTCAGCAATTCAAGCTGATTCTAGATCTCTCGCCACGTTACTGTTAATTCGAGATATCCAGGCAAAGCGTCTCCCT TACAGAGTAGCCATGTTCACCCCAGTTGAGAGAGGAAGCTTCTCACAAGGATCCTGGATAGGGGAGATGCAACAGGCTTCTGATAAATCAGTGATAGTCA GTGAAATTCTGGACCCCAGGACTAAGAACCTATTATCCATGTCGAAGATCAGCGACTACGTGCTGTCAAATGAACTAGTGAGCATGGCACTGGCAATGGT AGCGGAGGATCGACAGATTAATTTCGTACTAGAAGATCTGTTTGCAGAGGAGGGAAATGAGCTGCAGATAAGAGAAGCAGATCTATACCTAAGGGAAGGA GAAGAACTGAGCTTCTATGAGATAGTGTTGAGAGCTAGGCAGAGGAAAGAAATCGTGATTGGTTGCCGTTTAAGTAATGCTGAAAGAGCTGTTATGAATC CAACAGCAAAGAGCGAGAGGAGGAGGTGGTCAGTGAAGGATGTGTTTGTGGTCATAGCTGAAAAGGAATAG
AA sequence Show only first row Show all	>Lus10041011 pacid=23179790 polypeptide=Lus10041011 locus=Lus10041011.g ID=Lus10041011.BGIv1.0 annot-version=v1.0 MDAESSSITPPSPLPPTTSSRDWFFPSPSTFVNPDYPLRARSRRFSTTLPRASSSSSSPTSAPPYPRFRRRRQVHFPHHLSPKPEHGIAVSSSAPLPQEE AVHTHAETTTALRKKPCARFTYFGLQLPTWFTRWHFAVSASFLITILASLMHKNFSLRNQVIDLQVSVSKARAIIVIAEDGNADQSDARALRTVLSLTAV RKGPRGHIIVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQWARQRGLAQFMLIVTNDPRQIWEDILGFENCEFYIKRWPQLDGLQFEDVLISFPDA IPHGVKVASCGGKIVLNPDDSYTLQEGDEVLVIAEDDDTYAPAAVPTVWRGSLPKDFNVPKSAERILLCGWRRDMEDIIMVKLQKVNLMNLLVQESGGRY LRISRAALDAFLAPGSELCMFNDVPENEREKKLIDGGLDISRLVNICLVNRDGNAVIRRHLESLPLESFDSSVEDSAIQADSRSLATLLLIRDIQAKRLP YRVAMFTPVERGSFSQGSWIGEMQQASDKSVIVSEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINFVLEDLFAEEGNELQIREADLYLREG EELSFYEIVLRARQRKEIVIGCRLSNAERAVMNPTAKSERRRWSVKDVFVVIAEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49960			unknown protein		Lus10041011 [exp]	0	1
AT4G10970			unknown protein		Lus10032393 [exp]	2.8	0.8703
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	7.1	0.8426
AT5G55060			unknown protein		Lus10021546 [exp]	8.7	0.8762
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	12.2	0.8776
AT1G23230			unknown protein		Lus10016701 [exp]	17.7	0.8432
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	21.6	0.8730
					Lus10009341 [exp]	24.0	0.8073
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	25.5	0.8483
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	27.3	0.8185
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	28.6	0.8638

Compare expression of checked genes

Lus10041011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.