Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50370 237 / 4e-80 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 235 / 2e-79 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT4G26720 137 / 7e-41 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 134 / 1e-39 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT1G10430 117 / 3e-33 PP2A-2 protein phosphatase 2A-2 (.1) AT1G69960 115 / 1e-32 PP2A serine/threonine protein phosphatase 2A (.1) AT1G59830 112 / 2e-31 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G42500 106 / 2e-29 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 107 / 3e-29 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G39840 87 / 2e-21 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013456 [exp] 240 / 2e-81 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10041015 [exp] 240 / 2e-81 AT1G50370 570 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 237 / 4e-80 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 237 / 4e-80 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016576 [exp] 139 / 7e-41 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10013095 [exp] 132 / 3e-39 AT5G55260 388 / 4e-137 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10030810 [exp] 118 / 2e-33 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 118 / 2e-33 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 118 / 2e-33 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003200 [exp] 239 / 7e-81 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 234 / 3e-79 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G358700 [exp] 132 / 3e-39 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.011G092200 [exp] 132 / 7e-39 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 117 / 4e-33 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 117 / 5e-33 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 113 / 1e-31 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 112 / 4e-31 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.001G007800 [exp] 106 / 4e-29 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 106 / 5e-29 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041012 pacid=23179521 polypeptide=Lus10041012 locus=Lus10041012.g ID=Lus10041012.BGIv1.0 annot-version=v1.0 ATGTGGAGTGATCCTGAAGACATAGAAACATGGGCAGTTAGTCCCAGAGGAGCAGGTTGGCTTTTTGGATCAAGGGTTACCTCTGAGTATAACCACATTA ACAATCTTGACTTGGTTTGTCGGGCGCATCAACTTGTACAAGAAGGCCTCAAGTACATGTTTCAAGATAAGGGCTTAGTAACCGTCTGGTCTGCACCGAA CTACTGTTACCGATGTGGGAATGTAGCTTCCATCCTGAGCTTCAATGAGAATATGGAGAGAGAAGTAAAGTTCTTCACCGAAACGGAGGAGAACAATCAG ATGAGAGGACCAAGAACAGGAGTGCCCTATTTCCTATGA
AA sequence Show only first row Show all	>Lus10041012 pacid=23179521 polypeptide=Lus10041012 locus=Lus10041012.g ID=Lus10041012.BGIv1.0 annot-version=v1.0 MWSDPEDIETWAVSPRGAGWLFGSRVTSEYNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQ MRGPRTGVPYFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041012 [exp]	0	1
AT4G35980			unknown protein		Lus10041889 [exp]	10.1	0.7882
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	11.1	0.7836
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	13.3	0.7657
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	15.0	0.7597
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	20.9	0.7311
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	21.8	0.7611
AT3G27050			unknown protein		Lus10035208 [exp]	25.6	0.7499
AT5G10780			unknown protein		Lus10040473 [exp]	28.7	0.7541
AT5G23395		MIA40	mitochondrial intermembrane sp...		Lus10001795 [exp]	33.7	0.7162
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	34.9	0.7320

Compare expression of checked genes

Lus10041012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.