Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23400 507 / 4e-175 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 214 / 4e-63 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 208 / 7e-61 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 195 / 6e-56 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 171 / 4e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 166 / 2e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 163 / 2e-44 Leucine-rich repeat (LRR) family protein (.1) AT4G36180 166 / 2e-43 Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 164 / 8e-43 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 164 / 1e-42 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041010 [exp] 963 / 0 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 893 / 0 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 198 / 6e-57 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 162 / 7e-44 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033384 [exp] 166 / 3e-43 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037955 [exp] 159 / 9e-42 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10013968 [exp] 160 / 3e-41 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10035429 [exp] 159 / 6e-41 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 156 / 3e-40 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001000 [exp] 523 / 0 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 204 / 4e-58 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 204 / 1e-57 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 183 / 4e-50 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G098900 [exp] 171 / 5e-47 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 166 / 2e-45 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 166 / 2e-43 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.003G117500 [exp] 163 / 2e-42 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 161 / 8e-42 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 159 / 4e-41 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041013 pacid=23179977 polypeptide=Lus10041013 locus=Lus10041013.g ID=Lus10041013.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTCTTGCTATTCATCGTCCTCTACCTCTTCCTCCTTAACAACAATGCCACTGCTCAACAACCTTCATCCGACAGGCTGGCACTTCTCCGGT TCAAAGCAGCAATTCTCCAGGACACTACTGGCACACTCTCCTCCTGGGTCGGCAACACAATCTCCGACTGGGAAGGCGTCCAATGCGATCCGTCAACCGG AAAGGTCTCTTCTTTGATTCTCCAAGCTCCGCCGGACGACGTCACTTCCTACATGAAAGGCACACTCTCTCCGTCACTCGGCAAGCTCACTTCTCTGGAG ACTCTGGTCATCACTGGTATGAAACACATTTCAGGTTATATTCCTCAATCCATCTCCAACCTCCCTCGCCTCGCGAATCTCGTCATCGAAGATGCTTCCC TCCAAGGCTCCATCCCTCCATCTCTAAGCCGTCTCTCCGGTCTGACGTCACTCTCCCTCGCTGGCAACCGCTTGATGGGCCCCATCCCTCTCGCCATTTT CAGCCTTCCCAAGCGCCAGCTCCTCGGTTTAGCCAGGAATTCTTTCACCGGCCGTATTGTCATTCCGGCAGCACATCTTCCTTTGCAGTCTTTGGATCTT AGCCACAACCAACTTTCCGGATCCATTCCGGGCAATCTCCTTTCTGCATTCCCAAACCTCACTTCACTTGACCTCTCTTATAACCTCTTCTCCGGCCAGC TCCCCACTTCTCTGTTTACTACTTCATCAACCCTGCAAGACATCTCCTTGGACCATAACCAACTCTCTGGAAGCCTCCCCATTAGCTTCACTGGTCTTAA ATCACTTACTCGTCTCTCCCTGAGCTCCAACCGCCTCATGGGACCGATCCCGCTTTCGATTTCGAGCTTGCAAAAGCTCTGGTATCTTAACATTTCCAGC AATGCCTTCTCCGGACCATTCCCTGCCATTACCGTTACAGGGCTTCCTTCGTTGTTGTCAGTTGACCTGTCATACAACGACTTTAGTATGGTGACCGTAC CAGACTGGATCAGAAATAGACAGCTTACAGATATCCGCCTAGCTGGCTGCAAACTGAGGGGGAGACTTCCTGTATTCACCAGACCAGAATCTCTCACCTC CTTAGACCTATCCGACAACTTCTTTGACAGCTTATCCCCCGGCTTCCTAACCAATGCCTCCACCTTGGAGAATATAAACCTGTCGCGAAACCAGCTCAGG TTCGACCTCTCGGAGTTGAGATTGCCGCAGATGGTCTCTTCTCTTCACATCCAGTCCAACCACATCACTGGCTCTCTTTCCGCTGTACTCAACAGCAGGT TCCTGAAGATCCTCAATGCTGCAAGCAACCAGATCGCAGGAGGGATACCGGTCTCGATCTCGAAGCTGCAACAGCTGAGTAGGCTGGATATAGGGAGGAA CCGTGTAACGGGATCGATTCCATCGAGCATCGGGATGCTGTCGAAACTGGAGTGGCTTGATGTCTCGGGGAATATGTTGACAGGTGGAATCCCAAGTAGC TTGCTGAATGTGAAGAGTGTGAGGCATGTAAACTTCAGGGGGAACAGACTGTGTGGAGAGATCCCTCAAGGAAGGCCTTACAACATCTTCCCTGCAAGTG CTTATGCTCACAATCTATGCCTCTGTGGTAAACCCTTGCCGACCTGTCCGCCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10041013 pacid=23179977 polypeptide=Lus10041013 locus=Lus10041013.g ID=Lus10041013.BGIv1.0 annot-version=v1.0 MKKLLLFIVLYLFLLNNNATAQQPSSDRLALLRFKAAILQDTTGTLSSWVGNTISDWEGVQCDPSTGKVSSLILQAPPDDVTSYMKGTLSPSLGKLTSLE TLVITGMKHISGYIPQSISNLPRLANLVIEDASLQGSIPPSLSRLSGLTSLSLAGNRLMGPIPLAIFSLPKRQLLGLARNSFTGRIVIPAAHLPLQSLDL SHNQLSGSIPGNLLSAFPNLTSLDLSYNLFSGQLPTSLFTTSSTLQDISLDHNQLSGSLPISFTGLKSLTRLSLSSNRLMGPIPLSISSLQKLWYLNISS NAFSGPFPAITVTGLPSLLSVDLSYNDFSMVTVPDWIRNRQLTDIRLAGCKLRGRLPVFTRPESLTSLDLSDNFFDSLSPGFLTNASTLENINLSRNQLR FDLSELRLPQMVSSLHIQSNHITGSLSAVLNSRFLKILNAASNQIAGGIPVSISKLQQLSRLDIGRNRVTGSIPSSIGMLSKLEWLDVSGNMLTGGIPSS LLNVKSVRHVNFRGNRLCGEIPQGRPYNIFPASAYAHNLCLCGKPLPTCPPKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	0	1
AT3G17350			unknown protein		Lus10043098 [exp]	2.0	0.8182
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	4.2	0.7479
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	6.8	0.8161
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	10.9	0.7497
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	12.8	0.7585
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	18.5	0.7759
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	24.8	0.7802
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	26.1	0.7439
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	31.2	0.7439
					Lus10029272 [exp]	32.3	0.7499

Compare expression of checked genes

Lus10041013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.