Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49960 747 / 0 unknown protein AT5G02940 155 / 5e-39 Protein of unknown function (DUF1012) (.1) AT5G43745 148 / 1e-36 Protein of unknown function (DUF1012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013455 [exp] 1098 / 0 AT5G49960 936 / 0.0 unknown protein Lus10041011 [exp] 907 / 0 AT5G49960 605 / 0.0 unknown protein Lus10035805 [exp] 795 / 0 AT5G49960 1146 / 0.0 unknown protein Lus10036585 [exp] 685 / 0 AT5G49960 1029 / 0.0 unknown protein Lus10039407 [exp] 160 / 2e-40 AT5G43745 1019 / 0.0 Protein of unknown function (DUF1012) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G097000 [exp] 923 / 0 AT5G49960 907 / 0.0 unknown protein Potri.013G128100 [exp] 882 / 0 AT5G49960 927 / 0.0 unknown protein Potri.003G008800 [exp] 790 / 0 AT5G49960 1142 / 0.0 unknown protein Potri.004G223400 [exp] 776 / 0 AT5G49960 1134 / 0.0 unknown protein Potri.008G160700 [exp] 169 / 3e-43 AT5G43745 1008 / 0.0 Protein of unknown function (DUF1012) (.1) Potri.010G078600 [exp] 166 / 3e-42 AT5G43745 966 / 0.0 Protein of unknown function (DUF1012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0582 [flax] [poplar] TrkA_C PF06241 [flax] [poplar] Castor_Poll_mid Castor and Pollux, part of voltage-gated ion channel
Representative CDS sequence Show only first row Show all	>Lus10041014 pacid=23179926 polypeptide=Lus10041014 locus=Lus10041014.g ID=Lus10041014.BGIv1.0 annot-version=v1.0 ATGCGAATGGATGCGGAATCATCCTCCATTACCCCGCCGTCTCCACTTCCACCTACTACCAGCAGCAGGGACTGGTTCTTTCCTTCTCCTTCCACTTTCG TCAACCCAGATTTTACCCACTTCGTGCTCGCAGCCGCAGGTCCCAGAGCTTCCTCCTCCCCGACTTCTGCTCCTCTTTATCCAAGGTTCCGCCGCCGCCG CCAAGTTCACTTCCCTAACCATCTCTCCCCCAAGCCCGAACACGGTATTGCCGTTTCGTCTTCTGCACCACTTCCGCAGGAAGACGCTGGTCGTACTCAC GCCGAGACCACCACCGCTCTAAGGAACAAACCGTGTGCTCAGTTCACATACTTTGGGCTTCAACTGCCTACTTGGTTTACGCGATGGCATTTCGCCGTTT CTGCATCGGATGAAATTTCGAGACTGAACGGCAGGTTACGAGCCTGCGATTTGTATTCTTCAATCGATTCCCCGTCACAGGAAAATGTGATTGATGATCT TCACCCTGGTCAAGGCTTAAAACATTTGTCTCTCGTAGCCTCACTTTCCATATTATCTATCCCACTTCTCATTTTCAAGTATATTGATCATGTCTCCAAG TCGAGGTCTTCAGAGGTAGCTCCAGAAGAAGTTTCTTTAAGCAAGCGGCTTGCATACCGGGTGGATGTCTCTCTATCTGATTCAATTTCTGAGAAGTTCG ATTCACCGAGGAAGGGAAGAAGTGAAGTAGTTGAGCAAAACCACACCCTTATTCTTGGATGGAGTGATAAGCTGGGTTCACTGCTGAATCAGCTTGCAAT AGCCAACGACAGTTTAGGTGGGGGGACTGTTGTAGTAATGGCTGAACGAGACAAAGAAGAGATGGAATTAGACATTGGAAAAATGGAGTTTGACTTCAAA GGGACTTTTGTCATATGCCGAAGTGGGAGCCCTTTGATTTTGACCGACCTCAAAAAGGTATCTGTTTCAAAGGCCCGTGCCATAATTGTGATTGCTGAGG ACGGAAATGCTGACCAGAGTGATGCTCGTGCATTGAGAACAGTCTTGAGTCTAACAGCAGTTAGAAAAGGACCAAGGGGACATATTATCGTGGAGTTAAG TGATCTTGACAATGAGGTCCTTGTGAAACTTGTTGGTGGAGATCTTGTAGAGACGGTTGTTGCACATGATGTAATTGGCCGGCTGATGATTCAATGGGCT CGACAGCGAGGATTGGCACAGTTTATGCTCATTGTTACCAATGATCCACGGCAGATTTGGGAAGACATCCTTGGGTTCGAAAATTGTGAGTTTTACATCA AGAGATGGCCACAGTTAGACGGCTTGCAGTTTGAGGATGTCTTGATCAGCTTTCCTGATGCTATACCCCATGGGGTCAAGGTTGCTTCTTGCGGTGGTAA GATTGTCTTGAATCCTGACGATTCGTACACTCTACAAGAAGGTGACGAAGTGCTTGTTATAGCAGAAGATGATGATACTTACGCTCCAGCAGCAGTACCC ACGGTAAAAGAAGCATCATTTGTAAACTTTGATCGATCAACGAGAAAGCCACAGAAGATTCTACTTTGTGGATGGAGGAGGGACATTGATGATATGATTG TGGTATGGAGGGGAAGTCTGCCCAAAGACTTCAATGTGCCAAAGTCTGGAGAAAGGATACTGCTTTGTGGCTGGCGAAGAGATATGGAAGATATTATCAT GGCGTTGGATGCTTTTCTTGCACCTGGTTCTGAGCTCTGTATGTTCAATGATGTTCCTGAGAATGAGAGGGAAAAGAAGCTTATTGACGGTGGTCTTGAC ATCAGTAGGCTGGTGAATATATGTTTGGTTAACAGAGACGGAAATGCAGTTATTAGGCGACACTTGGAAAGCCTTCCCCTTGAATCTTTCGATTCGTCGG TTGAAGATTCAGCAATTCAAGCTGATTCTAGATCTCTCGCCACGTTACTGTTAATTCGAGATATCCAGGCAAAGCGTCTCCCTTACAGAGTAGCCATGTT CACCCCAGTTGAGAGAGGAAGCTTCTCACAAGGATCCTGGATAGGGGAGATGCAACAGGCTTCTGATAAATCAGTGATAGTCAGTGAAATTCTGGACCCC AGGACTAAGAACCTATTATCCATGTCGAAGATCAGCGACTACGTGCTGTCAAATGAACTAGTGAGCATGGCACTGGCAATGGTAGCGGAGGATCGACAGA TTAATTTCGTACTAGAAGATCTGTTTGCAGAGGAGGGAAATGAGCTGCAGATAAGAGAAGCAGATCTATACCTAAGGGAAGGAGAAGAACTGAGCTTCTA TGAGATAGTGTTGAGAGCTAGGCAGAGGAAAGAAATCGTGATTGGTTGCCGTTTAAGTAATGCTGAAAGAGCTGTTATGAATCCAACAGCAAAGAGCGAG AGGAGGAGGTGGTCAGTGAAGGATGTGTTTGTGGTCATAGCTGAAAAGGAATAG
AA sequence Show only first row Show all	>Lus10041014 pacid=23179926 polypeptide=Lus10041014 locus=Lus10041014.g ID=Lus10041014.BGIv1.0 annot-version=v1.0 MRMDAESSSITPPSPLPPTTSSRDWFFPSPSTFVNPDFTHFVLAAAGPRASSSPTSAPLYPRFRRRRQVHFPNHLSPKPEHGIAVSSSAPLPQEDAGRTH AETTTALRNKPCAQFTYFGLQLPTWFTRWHFAVSASDEISRLNGRLRACDLYSSIDSPSQENVIDDLHPGQGLKHLSLVASLSILSIPLLIFKYIDHVSK SRSSEVAPEEVSLSKRLAYRVDVSLSDSISEKFDSPRKGRSEVVEQNHTLILGWSDKLGSLLNQLAIANDSLGGGTVVVMAERDKEEMELDIGKMEFDFK GTFVICRSGSPLILTDLKKVSVSKARAIIVIAEDGNADQSDARALRTVLSLTAVRKGPRGHIIVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQWA RQRGLAQFMLIVTNDPRQIWEDILGFENCEFYIKRWPQLDGLQFEDVLISFPDAIPHGVKVASCGGKIVLNPDDSYTLQEGDEVLVIAEDDDTYAPAAVP TVKEASFVNFDRSTRKPQKILLCGWRRDIDDMIVVWRGSLPKDFNVPKSGERILLCGWRRDMEDIIMALDAFLAPGSELCMFNDVPENEREKKLIDGGLD ISRLVNICLVNRDGNAVIRRHLESLPLESFDSSVEDSAIQADSRSLATLLLIRDIQAKRLPYRVAMFTPVERGSFSQGSWIGEMQQASDKSVIVSEILDP RTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINFVLEDLFAEEGNELQIREADLYLREGEELSFYEIVLRARQRKEIVIGCRLSNAERAVMNPTAKSE RRRWSVKDVFVVIAEKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49960			unknown protein		Lus10041014 [exp]	0	1
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	11.5	0.7702
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	13.6	0.7837
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	15.1	0.7955
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	20.0	0.7719
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	21.8	0.7611
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	28.2	0.7876
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	34.7	0.7704
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	35.9	0.7638
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	36.2	0.7576
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	39.8	0.7131

Compare expression of checked genes

Lus10041014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.