Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50370 570 / 0 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 569 / 0 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT4G26720 364 / 3e-127 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 361 / 7e-126 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT1G69960 333 / 5e-115 PP2A serine/threonine protein phosphatase 2A (.1) AT1G10430 332 / 2e-114 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 329 / 3e-113 PP2A-1 protein phosphatase 2A-2 (.1.2) AT3G58500 328 / 4e-113 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 327 / 1e-112 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT2G29400 239 / 7e-78 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013456 [exp] 581 / 0 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10017361 [exp] 572 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 571 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016576 [exp] 365 / 1e-126 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10030810 [exp] 332 / 3e-114 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 332 / 3e-114 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 333 / 5e-114 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 331 / 6e-114 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 325 / 2e-111 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003200 [exp] 577 / 0 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 570 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.011G092200 [exp] 355 / 8e-124 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 352 / 1e-122 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 334 / 3e-115 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 332 / 3e-114 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 327 / 1e-112 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 327 / 3e-112 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 326 / 4e-112 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.010G039700 [exp] 325 / 9e-112 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10041015 pacid=23179850 polypeptide=Lus10041015 locus=Lus10041015.g ID=Lus10041015.BGIv1.0 annot-version=v1.0 ATGGATTTGGATCAGTGGATTTCGAAGGTGAAGGAAGGGCAGCACCTCCTGGAAGACGAGCTCCAACTTCTATGCGAATATGTAAAAGACATTCTAATTG AGGAATCCAATGTTCAGCCTGTCAACAGTCCTGTGACTGTTTGTGGGGATATTCATGGTCAGTTTCATGATCTAATGAAGCTTTTCCAAACCGGAGGTCA TGTTCCGGAGACAAATTACATATTTATGTTCCATGATTCTCCTGTGTTTAGGTACCCTGCTAATATCACACTTTTGCGTGGGAATCATGAGAGCAGACAA CTAACTCAGGTTTATGGTTTCTACGACGAATGCCAGAGGAAGTATGGGAATGCTAATGCATGGCGTTATTGTACAGATGTTTTTGATTACCTTACACTGT CAGCTATTATAGATGGCACAGTGCTTTGTGTCCATGGTGGTCTTTCTCCAGATGTCCGGACTATTGATCAGATAAGAGTAATTGAACGGAACTGTGAAAT TCCACACGAAGGACCATTTTGTGATCTTATGTGGAGTGATCCTGAAGACATAGAAACATGGGCAGTTAGTCCCAGAGGAGCAGGATGGCTTTTTGGATCA AGGGTTACCTCTGAGTATAACCACATTAACAATCTTGACTTGGTTTGTCGGGCGCATCAACTTGTACAAGAAGGGCTCAAGTACATGTTTCAAGATAAGG GCTTAGTAACTGTGTGGTCTGCACCAAACTACTGTTACCGATGTGGGAATGTGGCATCCATCCTGAGCTTCAATGAGAACATGGAGAGAGAAGTAAAGTT CTTCACTGAAACGGAGGAGAACAATCAGATGAGAGGACCAAGAACAGGAGTGCCCTATTTCCTATGA
AA sequence Show only first row Show all	>Lus10041015 pacid=23179850 polypeptide=Lus10041015 locus=Lus10041015.g ID=Lus10041015.BGIv1.0 annot-version=v1.0 MDLDQWISKVKEGQHLLEDELQLLCEYVKDILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMFHDSPVFRYPANITLLRGNHESRQ LTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDVRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGS RVTSEYNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	0	1
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	1.0	0.8758
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	1.7	0.8691
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	3.5	0.8574
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	3.7	0.8263
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	4.5	0.8695
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	4.6	0.8467
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	4.9	0.8532
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	5.5	0.8549
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	9.9	0.8425
AT2G39170			unknown protein		Lus10017465 [exp]	10.6	0.8070

Compare expression of checked genes

Lus10041015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.