Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16800 335 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 301 / 1e-103 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT5G11340 65 / 8e-13 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39000 47 / 6e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013457 [exp] 518 / 0 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013120 [exp] 62 / 1e-11 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10008088 [exp] 54 / 1e-08 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10040401 [exp] 50 / 6e-07 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10023517 [exp] 47 / 6e-06 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 45 / 2e-05 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 44 / 8e-05 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079900 [exp] 395 / 1e-140 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.019G050700 [exp] 392 / 1e-139 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G248900 [exp] 61 / 3e-11 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 57 / 4e-10 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G039300 [exp] 47 / 4e-06 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 43 / 0.0001 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10041016 pacid=23179812 polypeptide=Lus10041016 locus=Lus10041016.g ID=Lus10041016.BGIv1.0 annot-version=v1.0 ATGGCAAGGCCCAAAGTCTCCCACCGTCCAAGCATATGCTTCAGGGCTATACTCCCCTCTGATCTGGAGATTTTAGAGCTAATGCATACTGAAATATTTC CTATTAGGTACGAGTCTGAGTTTTTCCAACATGTTGTCAATGGACATGATATTGTGTCCTGGGCAGCCATTGATCGTGGTCGGCCGAATGGTAATGGTGA TGAAATGATAGGATTTGTTACTGCAAGGATTGTGTTAGCAAAAGAAAGCGAGATAGGAGATTTACTTAGATATGACCCGTCTAGACCCGATCAGACATTA CTCTACATTTTGACACTTGGAGTAGTTGATACCTACAGGAATCTTGGTATAGCATCTTCTCTTATCCGTGAGGTGACCCAATATGCTTCAAGTATTCGAA CTTGCCGTGCAATTTACTTGCACGTAATATCGTACAACATTGCTGCTATCCAGTTATATAAAAAAATGTCATTCAGGTGTATACGGAGGCTGCAAGGTTT TTATTTCATCAACGGACAACATTATGATTCTTTCTTGTTCGTTTACTACGTGAATGGTGGTCGTTCTCCATGCTCACCATTAGAGTTTGTCACATATTTA TTGGCTTACATGAGGAGTAGTCTGAAGTCGGTTGCATCGAGGCTAAAGAAGAGAGATGACCGGTTGCCAAAATGGCCAAAATGTAAAGACCCACATTCAC TTGCATCGTCGCAAAGCAAGAGAAATCTTAAAGCGGAATGTAGTGGGTATGAATCTGTATGA
AA sequence Show only first row Show all	>Lus10041016 pacid=23179812 polypeptide=Lus10041016 locus=Lus10041016.g ID=Lus10041016.BGIv1.0 annot-version=v1.0 MARPKVSHRPSICFRAILPSDLEILELMHTEIFPIRYESEFFQHVVNGHDIVSWAAIDRGRPNGNGDEMIGFVTARIVLAKESEIGDLLRYDPSRPDQTL LYILTLGVVDTYRNLGIASSLIREVTQYASSIRTCRAIYLHVISYNIAAIQLYKKMSFRCIRRLQGFYFINGQHYDSFLFVYYVNGGRSPCSPLEFVTYL LAYMRSSLKSVASRLKKRDDRLPKWPKCKDPHSLASSQSKRNLKAECSGYESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	0	1
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	1.0	0.9649
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	3.5	0.9382
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	4.2	0.9401
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	4.7	0.9464
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	5.3	0.9332
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	5.9	0.9343
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	6.9	0.9333
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	7.2	0.9215
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	8.4	0.9081
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	10.0	0.8881

Compare expression of checked genes

Lus10041016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.