Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31890 585 / 0 ARM repeat superfamily protein (.1.2) AT2G25130 484 / 2e-168 ARM repeat superfamily protein (.1) AT2G27430 143 / 2e-37 ARM repeat superfamily protein (.1) AT3G46510 105 / 7e-24 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 105 / 2e-23 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G67530 103 / 6e-23 ARM repeat superfamily protein (.1.2) AT2G28830 97 / 4e-21 AtPUB12 PLANT U-BOX 12 (.1) AT1G27910 97 / 6e-21 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT1G24330 94 / 4e-20 ARM repeat superfamily protein (.1) AT3G54790 94 / 6e-20 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013459 [exp] 927 / 0 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001881 [exp] 159 / 4e-43 AT2G27430 410 / 7e-141 ARM repeat superfamily protein (.1) Lus10013918 [exp] 122 / 1e-30 AT2G27430 337 / 4e-114 ARM repeat superfamily protein (.1) Lus10016565 [exp] 114 / 2e-26 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 112 / 7e-26 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 102 / 8e-23 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 102 / 1e-22 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10011514 [exp] 100 / 1e-21 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 100 / 1e-21 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263100 [exp] 652 / 0 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.011G065300 [exp] 168 / 2e-46 AT2G27430 449 / 2e-156 ARM repeat superfamily protein (.1) Potri.004G055500 [exp] 167 / 4e-46 AT2G27430 478 / 1e-167 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 108 / 7e-25 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 108 / 1e-24 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.017G128100 [exp] 99 / 3e-22 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 100 / 4e-22 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 100 / 8e-22 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.009G165900 [exp] 99 / 1e-21 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.005G144700 [exp] 98 / 4e-21 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041017 pacid=23179754 polypeptide=Lus10041017 locus=Lus10041017.g ID=Lus10041017.BGIv1.0 annot-version=v1.0 ATGGCCAAGTGTCACCGCAGCAACACCAACAACATCGGATCCCTAGTCTTGGATCACTCTCCAGCCACCGGCGCCACCGGGAACGGTCAGTTCCGCTTCT GGACGGCCTTCTCCGTCGCTGCATTTCGCCGCAAGATCTTCGACGCCGTCAGCTGCGGCGGGAGCTCCCGTTCCCCCCCCCGCCACGATCTCGATGATCT TCTCGACGAGATTTCCTCCGGCGGAACCGCAATCAGCTCAGCCGGCGAGAGTGCTACTACTATTACTACTGTTGCGAGTGAGCGCACGTTCGAGAAAACT AAAACTGCGGCGAGGAGTGTGAAATCAGAGAGGCTGTCAGATCTCTTGAGCATTGCCGAGTGTGAGAGCGAGGCGGAGACGAACAAGAAAGTCGAAGCGT TGGAGGAGTTGAAACGAGCAGTCAGGGAATTGCAATTGGAAGACGAAGGCGAGAGGAGGAAAGTAGCTGCTCGTAAGGTGAGGTTACTGGCCAAGGAAGA TTCGGGAGCCAGAGTGACATTGGCTATGTTAGGAGCCATTCCTCCACTCATCGGCATGCTCGATTTGGAAGACGCCGATTCTCAGATCGCATCACTCTAT TCCTTACTCAATCTGGGTATCGGAAACGACGCGAACAAAGCTGCCATAGTGAAAGCAGGGGCAGTGCACAAGATGCTAACGATTATAGCATCTCCAAATA CTCCAAACCCATCGGTATCGGAGGCAATTGTAGCTAATTTTCTCGGTTTGAGCGCTTTGGACTCCAATAAACCGATCATTGGTTCTTCAGGTGCAATCCC TTTCTTGTTTGGCACCTTGAAGGATTCAGATCATAAGAGCAGCTGTCAAGCCAAACAAGATGCTCTGAGGGCTCTTTACAACCTCTCCATTGACCCATTG AATGTCACATTTATTCTAGAAACTGATATAGTCCAGTATCTCCTTAATGTGCTGGGGGACATGGAAGTAAGTGAAAGGGTCCTTTCAATTTTGAGCAACG TAGTATCAACCCCAGAAGGTAGAAAGGCACTGAGCAGTGCACAAGATGGGTTCCTGATCCTGGTTGATGTGTTGAACTGGACCGATTCGCCCGGTTGCCA GGAGAAAGCCTCTTACATATTGATGGTAATGGCACATAAATCTTATGGAGATAGACAAGCAATGATCGAAGCAGGAATCATGTCTGCTTTGCTTGAATTG ATGCTTTTGGGGAGCACTTTGACGCAGAAGAGAGCTTCGAGGATACTTGAGTGTCTTAGAGTAGATAAAGGGAAGCAAATATCAGAGAGTTATGGTGGGA ATGTGGGGGCAGCAGTTTCTGCTCCAATCTGTGGTGGCTCATCGGCATCCTCTGGTCAGACACATGATGTTTTGAAGGAGTGCTCGTTGGAGGTGGAAGG CATGATGAGCGAGGAAAAGAAGGCTGTGAAACAATTAGTACAACAAAGTTTGCAGAATAACATGAAGAGGATTGTGAAGAGAGCCAATCTGCCGCAGGAT TTTGCTCCATCTGAGCATTTCAAGGCACTCACAGCAAGTTCAACCTCCAAAAGTTTGCCATTTTGA
AA sequence Show only first row Show all	>Lus10041017 pacid=23179754 polypeptide=Lus10041017 locus=Lus10041017.g ID=Lus10041017.BGIv1.0 annot-version=v1.0 MAKCHRSNTNNIGSLVLDHSPATGATGNGQFRFWTAFSVAAFRRKIFDAVSCGGSSRSPPRHDLDDLLDEISSGGTAISSAGESATTITTVASERTFEKT KTAARSVKSERLSDLLSIAECESEAETNKKVEALEELKRAVRELQLEDEGERRKVAARKVRLLAKEDSGARVTLAMLGAIPPLIGMLDLEDADSQIASLY SLLNLGIGNDANKAAIVKAGAVHKMLTIIASPNTPNPSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLFGTLKDSDHKSSCQAKQDALRALYNLSIDPL NVTFILETDIVQYLLNVLGDMEVSERVLSILSNVVSTPEGRKALSSAQDGFLILVDVLNWTDSPGCQEKASYILMVMAHKSYGDRQAMIEAGIMSALLEL MLLGSTLTQKRASRILECLRVDKGKQISESYGGNVGAAVSAPICGGSSASSGQTHDVLKECSLEVEGMMSEEKKAVKQLVQQSLQNNMKRIVKRANLPQD FAPSEHFKALTASSTSKSLPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31890			ARM repeat superfamily protein...		Lus10041017 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	3.3	0.9012
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	9.4	0.8965
AT2G41460		ARP	apurinic endonuclease-redox pr...		Lus10000437 [exp]	11.0	0.8828
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	11.5	0.8805
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	12.6	0.8605
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	15.3	0.8545
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	15.5	0.8908
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	16.1	0.8708
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	21.8	0.8738
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	22.4	0.8868

Compare expression of checked genes

Lus10041017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.