Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25170 1718 / 0 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 1130 / 0 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G13370 565 / 3e-174 CHR5 chromatin remodeling 5 (.1) AT5G44800 543 / 1e-163 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT5G18620 421 / 5e-127 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 420 / 1e-126 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 382 / 7e-113 Homeotic gene regulator (.1) AT3G06010 380 / 6e-112 ATCHR12 Homeotic gene regulator (.1) AT2G44980 343 / 6e-101 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 335 / 8e-99 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005339 [exp] 2711 / 0 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10038363 [exp] 553 / 1e-166 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10022423 [exp] 544 / 4e-166 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 535 / 3e-164 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10036223 [exp] 535 / 4e-162 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10033967 [exp] 417 / 4e-121 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 379 / 1e-111 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 374 / 1e-109 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 358 / 1e-106 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262200 [exp] 1982 / 0 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 1974 / 0 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.003G110100 [exp] 569 / 2e-172 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G253400 [exp] 556 / 8e-171 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.001G123400 [exp] 564 / 2e-170 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.009G047800 [exp] 545 / 7e-167 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.010G021400 [exp] 424 / 3e-128 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 421 / 5e-127 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.007G026700 [exp] 358 / 2e-107 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G149900 [exp] 365 / 1e-106 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] PF06461 [flax] [poplar] DUF1086 Domain of Unknown Function (DUF1086) CL0023 [flax] [poplar] PF06465 [flax] [poplar] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Lus10041019 pacid=23179660 polypeptide=Lus10041019 locus=Lus10041019.g ID=Lus10041019.BGIv1.0 annot-version=v1.0 ATGAGTAGCTTGGTTGAGAGGCTTAGAGTCCGATCTGATCGAAGGCCGATATACAACCTTGATGAATCAGATGATGAAGATTTTCTGTCCCGAAAAGCTG GGAAATCAGCAGAAAATGCAGAGAGAATAGTCCGACCTGATGCGAAAGATAACCTATGTCAAGCATGTGGAGAAAGTGGCGAGCTTGTGAACTGTGAAAC CTGCACTTATGCCTATCATGCGAAGTGTCTGCTTCCACCCCTAAAAGCTCCTCCTTCCAGCAGTTGGAGCTGTCCTGAATGTGTTAGTCCTCTAAATGAA ATTGAGAAGATATTGGACTGTGAAATGCGTCCAACGGCAGCTGATGATAGTGATGCATCTACGCTGGGCTCAAAGCAAATTTTCGTTAAGCAATATCTGG TGAAGTGGAAGCGGTTATCATATCTTCACTGCACTTGGGTTCCTGAGAAAGAGTTCGTGAAAGCATTCAAGTCAAACCCCCGTCTTAGGACTAAATTAAG CAACTTCCATAGACAAGGTACCTCAACCAATTCTGAGGAGGAACCTGCAATCAGGCCAGAATGGACAACAGTTGATAGAATTCTTGCATGCAGGGGTGAG GATGATGAAAAGGAATACCTTGTGAAGTATAAGGAACTTCCTTATGATGAATGTTACTGGGAATTTGAAACAGATATATCAGCATTTCAGCCAGAAATAG AGAAGTTTAATATAATTCACTTAAAGTCCCACCGGTTAAATAAGCAAAAGAGTTTCCGTGATGCTCCTGATTCCAAGAAGAATTTGAAAGAATTCCAACA GATTGAGCAAAGCCCTGAGTTTATCTCAGGAGGCTCATTGCATCCATATCAACTAGAAGGGGTAAACTTTCTGCGGGTTTTTTTTTTTAAGCAAACACAT GTCATACTTGCCGATGAAATGGGTTTGGGGAAAACTATACAAAGTATTGCTTTTCTAGCATCTCTGTTCGAAGAGAACCTGTACCCCCATTTAGTGATTG CCCCACTTTCAACATTGAGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAACTGAATGTCGTTATGTATGTTGGTTCTGCTCAAGGCCGTGCTGT CATTAGGGAATATGAGTTTTACTACCCTAAAAATCACAAGAAGATGAAGAAAAAGAAATCTGGTCAACTTGTTAGTGAAAGCAAGCAAGATAGGATAAAG TTTGATGTGCTCTTGACTTCCTATGAGATGGTTAACATGGATACAGCATCCCTAAAACCCATTAAATGGGAGTGCATGATTGTCGACGAAGGTCATCGCC TGAAAAACAAGGATTCAAAACTTTTTATTTCTCTGAAGCAATATTCCAGTAATCACCGTGTGCTTTTGACGGGGACCCCTCTTCAGAATAATCTTGATGA GCTATTCATGCTGATGCACTTCCTTGATGCTGGAAAGTTTTCAAGTTTGGAGGAGTTTCAAGAAGAGTTCAAGGATATAAATCAGGAGGAACAGATTTCT CGGCTTCATAAAATGTTGGCTCCCCATCTCCTTAGAAGGGTGAAAAAGGATGTTATGACAGAGTTGCCTCCTAAAAAGGAACTCATTCTACGTGTTGATC TAAGTAGCTTGCAAAAAGAATATTACAAGGCAATTCTAACTCGTAATTACCAAATTTTAACACGGCGTGGTGGTCCACAGATTTCACTTATCAACGTGGT TATGGAATTGCGGAAGCTCTGCTGTCATCCTTATATGTTAGAAGGAGTTGAACCAGCAATAGACGATCCAACAGAATCTTTCAAGCAATTTGTGGAGTCA TCTGGAAAGTTGCAACTACTTGACAAAATGATGGTGAAACTGAAAGAGCAAGGCCATAGAGTTCTTATTTATTCCCAGTTTCAGCACATGCTGGATTTAC TTGAGGATTACTGCGTCTACAAGAAATGGCAATACGAACGAATTGATGGGAAAGTTGGTGGAGCTGAGAGACAAATTCGCATTGATCGGTTTAATTCAAA AAATTCGTCCAGATTCTGTTTCCTTCTCTCTACTAGGGCTGGAGGACTGGGTATAAACCTTGCAACTGCTGATACAGTCATCATATACGACAGTGATTGG AATCCGCATGCTGACCTCCAGGCTATGGCTAGGGCTCATCGACTTGGCCAAACTAACAAGGTCATGATTTATAGGCTTATAACACGAGGAAGTATTGAGG AGCGCATGATGCAATTGACTAAGAAGAAAATGGTATTAGAACATCTTGTTGTTGGGAGGCTTAAGGCTCAAAATATAAACCAGGAAGAGTTGGATGACAT TATCAGGTATGGCTCAAAGGAGCTATTTGCTGATGAGAATGATGAATTGGGGAAGTCTCGTCAAATTCATTATGATGACGGTGCAATTAACCGATTACTG GACCGTGAACAAATTGGAGATGAAGAGGCAACATTGGACGATGAAGAAGAAAATGGATTTCTAAAGGCATTTAAGGTTGCAAACTTTGAGTATATTGATG AAAAGGCGGAGGAAGAAGCTCCAAAACCTGCGTTGGAGACGATGAGCAATTCAGAGAAATTAAATTTCTGGGAGGAGCTCTTAAGAGATAAATTTGAAGA GCAAAAGGGCGAGGAATCGAAATCTCTTGGAAAGGGAAAAAGAAGCCGCAAACAGATGGTGTCTGTTGAAGATGATGACCTTGCTGGTATGGAGGATTTA AGCTCTGATGGAGAGGATGACAATTATGAAGCAGACTTAACCGATGGAGAAACTTCATCGGGAACTCAGGCTGGGAGAAAACCTTACAGAAAGAGAGCTC GGGACAATTCTGAACCCATTCCTTTAATGGAAGGAGAAGGAAAGTCCTTCAAAGTACTTGGTTTCAATCAGAACCAGAGGGCTCTTTTTGTTCAGATAAT GATGAGGTTTGGAATTGGGGACGAAAACTGGAAACAGTTTGTACCTCGCATGAAACAGAAGACTCTCGAGGAAATCCATAATTATGGGAAGATGTTCTTC AGACATGTTATTGAAGAAATGAACGACTTACCACACTTCTCAGACGGTGTTCCTAAAGAAGGACTTCGAATAGCAGACGTATTGGTCAGAATTGCATCGT TGAATATAATGAGGCAAAAGGTGAAGCTCGTCTCAGAAAATCCAACCATGCCGCTTTTTGAGGAGGACGTTTATCCACGCTTGCCAGGACTGAAAGGTGG GAAATTTTGGACCGAAGAACATGATAAAACTTTACTCAAGGCAGTGATTAAGCAAGGCTATGGCCGTTGGCAAGCTATTCTTGATGACAAGGACGTGAAA ATTCAGGAAGTTGTATCCCAAGAGCTGAATCTCCCCGTTATGAATCTCCCTACCCCTGGGCAAATTTTGTCTCAGGCACAAAACGGTGCTAGTTCTGGGA TTACTGAAGGTCCAAGCACCCAGCAGGCCTCAGTAAATGCTACCGGGAATGAGATTGGCGCCAATGCTGCCCAGGGTATACCTCAAGGGCAATCTTACCA AGAATCCATCCTGTACCATCTTAGAGATATGCAGAGAAGAATGGTTGAATTTGTTAAGAAGAGGGTGCTTCTTCTTGAGCGGGGGATGAATGTTGAAGTC CAGAAAGAATACTATGCCAATCTAGATACTAAGCCAACAGTGAAAGATCCTAGTAGTGAAAGAAAGGGCACAAATCACTCAGCTTCAGTTTCGTTAGAGA CCGACTCTGAAAAGATTAATCAACTGCCGCCGATGGAAGAAATCACATCTGAAGATACTGTTGCTGCCGGTTGTGTTGCTGACCCAGATCGATTAGACTT GGTCGAGCTTCACAATAAGATGTGCAAGAGTGTTGAGAACATTGCTCCTGATTTGCTTACGACATCCTCAAGGAGCCAAATAACAAGTTTTGAACTGAAA CAGAAGCTTCAACCATTGGAGACCATCTGTGAGCGTATGAATACTGTGCTCTCACCTTCTGAGCAGCCATTGCAAGATGTGGAGCAAAAAGGAGGCGCTG AGCCACCCAGAAGTCTAGATGAGTCGTGCTCTACATCACTCGAACATAGCGAACATGCTCTTCCTAACAGTGTAGCAAAGATGGAGTTTGAAATCGGCAG TTTGTTTGGGATGCCAAGTGTGGGTTCAGTGACTGTGCCGGACACGATTGATGTGGAAATGGAAGATAAATGGAAGGATGGTGCCCCTGCCGCAGATGAT GATTTAACTAACAATGGCGGGCACCCGGGATTCCCATACTGA
AA sequence Show only first row Show all	>Lus10041019 pacid=23179660 polypeptide=Lus10041019 locus=Lus10041019.g ID=Lus10041019.BGIv1.0 annot-version=v1.0 MSSLVERLRVRSDRRPIYNLDESDDEDFLSRKAGKSAENAERIVRPDAKDNLCQACGESGELVNCETCTYAYHAKCLLPPLKAPPSSSWSCPECVSPLNE IEKILDCEMRPTAADDSDASTLGSKQIFVKQYLVKWKRLSYLHCTWVPEKEFVKAFKSNPRLRTKLSNFHRQGTSTNSEEEPAIRPEWTTVDRILACRGE DDEKEYLVKYKELPYDECYWEFETDISAFQPEIEKFNIIHLKSHRLNKQKSFRDAPDSKKNLKEFQQIEQSPEFISGGSLHPYQLEGVNFLRVFFFKQTH VILADEMGLGKTIQSIAFLASLFEENLYPHLVIAPLSTLRNWEREFATWAPQLNVVMYVGSAQGRAVIREYEFYYPKNHKKMKKKKSGQLVSESKQDRIK FDVLLTSYEMVNMDTASLKPIKWECMIVDEGHRLKNKDSKLFISLKQYSSNHRVLLTGTPLQNNLDELFMLMHFLDAGKFSSLEEFQEEFKDINQEEQIS RLHKMLAPHLLRRVKKDVMTELPPKKELILRVDLSSLQKEYYKAILTRNYQILTRRGGPQISLINVVMELRKLCCHPYMLEGVEPAIDDPTESFKQFVES SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYKKWQYERIDGKVGGAERQIRIDRFNSKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW NPHADLQAMARAHRLGQTNKVMIYRLITRGSIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDELGKSRQIHYDDGAINRLL DREQIGDEEATLDDEEENGFLKAFKVANFEYIDEKAEEEAPKPALETMSNSEKLNFWEELLRDKFEEQKGEESKSLGKGKRSRKQMVSVEDDDLAGMEDL SSDGEDDNYEADLTDGETSSGTQAGRKPYRKRARDNSEPIPLMEGEGKSFKVLGFNQNQRALFVQIMMRFGIGDENWKQFVPRMKQKTLEEIHNYGKMFF RHVIEEMNDLPHFSDGVPKEGLRIADVLVRIASLNIMRQKVKLVSENPTMPLFEEDVYPRLPGLKGGKFWTEEHDKTLLKAVIKQGYGRWQAILDDKDVK IQEVVSQELNLPVMNLPTPGQILSQAQNGASSGITEGPSTQQASVNATGNEIGANAAQGIPQGQSYQESILYHLRDMQRRMVEFVKKRVLLLERGMNVEV QKEYYANLDTKPTVKDPSSERKGTNHSASVSLETDSEKINQLPPMEEITSEDTVAAGCVADPDRLDLVELHNKMCKSVENIAPDLLTTSSRSQITSFELK QKLQPLETICERMNTVLSPSEQPLQDVEQKGGAEPPRSLDESCSTSLEHSEHALPNSVAKMEFEIGSLFGMPSVGSVTVPDTIDVEMEDKWKDGAPAADD DLTNNGGHPGFPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	1.0	0.9180
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	1.7	0.9035
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	2.2	0.8802
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	2.8	0.9100
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	3.3	0.8468
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	4.0	0.8901
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	4.2	0.8333
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	5.9	0.8698
AT4G10930			unknown protein		Lus10032402 [exp]	6.7	0.8522
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	8.5	0.8780

Compare expression of checked genes

Lus10041019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.