Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25170 306 / 4e-107 PPPDE putative thiol peptidase family protein (.1) AT2G25190 264 / 6e-90 PPPDE putative thiol peptidase family protein (.1) AT1G80690 250 / 1e-84 PPPDE putative thiol peptidase family protein (.1) AT4G31980 262 / 3e-84 unknown protein AT1G47740 225 / 4e-74 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 209 / 2e-68 PPPDE putative thiol peptidase family protein (.1) AT4G17486 206 / 2e-67 PPPDE putative thiol peptidase family protein (.1.2) AT4G25680 88 / 3e-21 PPPDE putative thiol peptidase family protein (.1) AT4G25660 88 / 4e-21 PPPDE putative thiol peptidase family protein (.1) AT3G07090 66 / 5e-13 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005341 [exp] 373 / 2e-133 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 335 / 1e-118 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 329 / 4e-116 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10042454 [exp] 234 / 8e-78 AT1G80690 265 / 1e-89 PPPDE putative thiol peptidase family protein (.1) Lus10026215 [exp] 232 / 5e-77 AT1G80690 265 / 8e-90 PPPDE putative thiol peptidase family protein (.1) Lus10032708 [exp] 224 / 3e-74 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 221 / 9e-73 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10040485 [exp] 219 / 2e-72 AT1G47740 272 / 6e-92 PPPDE putative thiol peptidase family protein (.1.2) Lus10011291 [exp] 218 / 1e-71 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261500 [exp] 327 / 8e-115 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 311 / 5e-109 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 272 / 2e-93 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 267 / 2e-91 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.002G134200 [exp] 230 / 1e-76 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 228 / 1e-75 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 224 / 2e-74 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 221 / 4e-73 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 220 / 1e-72 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.003G080300 [exp] 206 / 2e-67 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10041021 pacid=23179532 polypeptide=Lus10041021 locus=Lus10041021.g ID=Lus10041021.BGIv1.0 annot-version=v1.0 ATGTGGTGTCGGATGATCCTGCTGCACCCGAAGAAGAAGACTGGTTCTGTACCGGTTTACTTGAATGTTTATGATTTGACTCCGATGAATGGCTATGCAT ACTGGTTTGGCCTCGGAATTTACCATTCCGGTGTCCAAGTTCATGGAGTGGAGTATGGTTATGGAGCTCATGACCACTCAACAACGGGGATATTTGAGGT GGAACCTAGGCAGTGCCCTGGTTTCACTTTCAGGAAGTCAATACTCATTGGAAGGACTGATCTTGGTCCCAAGGAAGTTCATTCCATGATGGAGAAACTG GCACAAGAGTATTCAGGGAATACCTACCATCTTATCACCAAGAACTGCAATCACTTCTGCAATGATGTGTCTCTCAAGTTAACAGGGAAAACAATCCCCA ACTGGGTCAACCGACTTGCTCGTTTAGGTTTTCTTTGCAACTGTGTGCTGCCAGCAGAACTGAATGGAGCAAAAGTGGGGCAAGTTAGATCAGAAGAGAG GATGCAGCATGTAGAGAAGAAGAAATTAAGAAGCCGTTCAAGTAGATTTGTATCTGCAACTACACCTTCATTATCAACAAGTGGTTCCAGTTCCGCAAGA AGAAGTGGTAGGAATTGA
AA sequence Show only first row Show all	>Lus10041021 pacid=23179532 polypeptide=Lus10041021 locus=Lus10041021.g ID=Lus10041021.BGIv1.0 annot-version=v1.0 MWCRMILLHPKKKTGSVPVYLNVYDLTPMNGYAYWFGLGIYHSGVQVHGVEYGYGAHDHSTTGIFEVEPRQCPGFTFRKSILIGRTDLGPKEVHSMMEKL AQEYSGNTYHLITKNCNHFCNDVSLKLTGKTIPNWVNRLARLGFLCNCVLPAELNGAKVGQVRSEERMQHVEKKKLRSRSSRFVSATTPSLSTSGSSSAR RSGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	5.9	0.7562
AT5G14890			NHL domain-containing protein ...		Lus10001932 [exp]	9.8	0.6626
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	17.9	0.7216
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	20.4	0.6848
AT3G15810			Protein of unknown function (D...		Lus10038097 [exp]	26.2	0.6811
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	28.9	0.6458
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	33.8	0.6294
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	40.4	0.6800
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	47.5	0.6794
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10025599 [exp]	52.2	0.6664

Compare expression of checked genes

Lus10041021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.