Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11000 146 / 4e-42 Plant protein of unknown function (DUF868) (.1) AT2G25200 106 / 3e-27 Plant protein of unknown function (DUF868) (.1) AT3G04860 83 / 6e-19 Plant protein of unknown function (DUF868) (.1) AT5G28150 82 / 1e-18 Plant protein of unknown function (DUF868) (.1) AT4G12690 80 / 6e-18 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT2G27770 78 / 4e-17 Plant protein of unknown function (DUF868) (.1) AT2G04220 77 / 9e-17 Plant protein of unknown function (DUF868) (.1) AT3G13229 71 / 1e-14 Plant protein of unknown function (DUF868) (.1) AT5G48270 66 / 1e-12 Plant protein of unknown function (DUF868) (.1) AT2G36470 56 / 2e-09 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005342 [exp] 266 / 5e-91 AT5G11000 154 / 3e-45 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 142 / 6e-41 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 91 / 1e-21 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 91 / 2e-21 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 90 / 2e-21 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 80 / 1e-17 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 73 / 2e-15 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 73 / 4e-15 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 71 / 2e-14 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G021800 [exp] 192 / 7e-60 AT5G11000 278 / 2e-90 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 174 / 1e-52 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 94 / 4e-23 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 93 / 1e-22 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 91 / 1e-21 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 88 / 1e-20 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.013G036400 [exp] 88 / 1e-20 AT3G04860 137 / 3e-38 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 83 / 5e-19 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 81 / 3e-18 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.017G116200 [exp] 76 / 3e-16 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10041022 pacid=23179846 polypeptide=Lus10041022 locus=Lus10041022.g ID=Lus10041022.BGIv1.0 annot-version=v1.0 ATGGTTCTGAGGAGGGAGCAGGTGTTCGGAAACAGAGTTTACACCACCAAGGCCAGATTCGGCGGCGCTAACCGTCAGATTTCCATCGATTGTAGCATCG GGAGTGACGCGAGGCTGAGTTTCGCGGTGGATAATAAGAGGATCTTGCAAATTAAGAGGCTGAAGTGGAAGTTCAGAGGTAACGAGCGAGTCGAGGTCGA GGGAGTTCCGATTCAGATCTCGTGGGACGTCTACAATTGGCTGTTTGAAGATGGTGGTGGGGATGCACACGCAGTGTTCATGTTCAGGTTCGAAGAAGCG GAAGAAGAAGAAGAAGAGTATGATTACGACGGAGGAGCGGCGACGGCAACGGCTCTCTCGGAGAAGAGCGGAGCCGTGGTGCCGTGGCGGCCGCAGGAGG AGCGTCATAATTCATCTTCGTGGGGAGGAATAGGGATGATGTTGAAGAAGGGGCTGTTGATGAAGAGGGCGGCGGCAAGGAGTTCGTCGTGGTCGTCGAT ATCAATGTCGTCGGCGTCGTCGATGGGGACGAATTCGTCGGTGATGGAGTGGGCCAGCGTGGAAGAGAGCGAGTTGAGTAGTGGGCCTACTGGCTTCTCT TTACTGGTTTATGCCTGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10041022 pacid=23179846 polypeptide=Lus10041022 locus=Lus10041022.g ID=Lus10041022.BGIv1.0 annot-version=v1.0 MVLRREQVFGNRVYTTKARFGGANRQISIDCSIGSDARLSFAVDNKRILQIKRLKWKFRGNERVEVEGVPIQISWDVYNWLFEDGGGDAHAVFMFRFEEA EEEEEEYDYDGGAATATALSEKSGAVVPWRPQEERHNSSSWGGIGMMLKKGLLMKRAAARSSSWSSISMSSASSMGTNSSVMEWASVEESELSSGPTGFS LLVYAWKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	0	1
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	1.0	0.8694
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	2.8	0.8024
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	4.9	0.8430
AT1G57680			unknown protein		Lus10028891 [exp]	4.9	0.7819
AT3G52710			unknown protein		Lus10014206 [exp]	7.1	0.8018
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	8.1	0.7919
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	9.3	0.8164
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	13.8	0.7803
AT3G52710			unknown protein		Lus10022708 [exp]	14.9	0.7685
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	15.0	0.7707

Compare expression of checked genes

Lus10041022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.