Plant FIBer expression Database

Lus10041025 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25250 39 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005344
[exp]
240 / 3e-82 AT4G32020 66 / 1e-13 unknown protein
Lus10001940
[exp]
100 / 2e-27 AT4G32020 62 / 1e-12 unknown protein
Lus10001936
[exp]
87 / 6e-22 AT4G32020 57 / 2e-10 unknown protein
Lus10019069
[exp]
48 / 4e-07 AT4G02040 64 / 8e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G260000
[exp]
66 / 6e-14 AT4G32020 47 / 1e-06 unknown protein
Potri.018G022400
[exp]
62 / 2e-12 AT4G32020 62 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10041025 pacid=23179903 polypeptide=Lus10041025 locus=Lus10041025.g ID=Lus10041025.BGIv1.0 annot-version=v1.0
ATGGGACCCGCTGTTCTCAGTCCCCAAGACTGCCTCCGTGATGCTTTCCTCCCTTCTGGCCGCCTCCTATCCGCGCCACCACCTCCCTCCAAAATGCCCA
CCCCAAACCGCTCCTCCAGATACAATCGTGCTCAATCCAACCGTAGAAAGCGCAGCCCTAATTCCGATGCTTCTTCACCCTCTCCCCAGACCCGGCTCAA
TAATAATCTCGTTATGGGCCAGGTCAAGATTCTCAAGCGAGGAGAAGAAATTCAGCAGAAGAAGAAGAAGGAGCTGGCCAAGCCTCCCAATAACCACCGC
AAGAAGGTAGATATAACCGAAACTCACCCCGTTACTCCTCCTCCTGCTCCTGATCTGAACGGATCTGTGGTGGGGTTCTACGCCGGATCTGGATTTTTCA
CCTCGCCGCCTCCAAGCTCCTTGCCTCTTCCAGTGTTTCTGAAGAAGAGTGTTGACATGGAGGCTACTAGCGATCTGTGCAGGCTTCTGAACCTGGCTTT
TTAG
AA sequence
>Lus10041025 pacid=23179903 polypeptide=Lus10041025 locus=Lus10041025.g ID=Lus10041025.BGIv1.0 annot-version=v1.0
MGPAVLSPQDCLRDAFLPSGRLLSAPPPPSKMPTPNRSSRYNRAQSNRRKRSPNSDASSPSPQTRLNNNLVMGQVKILKRGEEIQQKKKKELAKPPNNHR
KKVDITETHPVTPPPAPDLNGSVVGFYAGSGFFTSPPPSSLPLPVFLKKSVDMEATSDLCRLLNLAF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25250 unknown protein Lus10041025
[exp]
0 1
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Lus10019526
[exp]
1.0 0.9334
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Lus10041612
[exp]
1.7 0.9158
AT4G21350 PUB8, B80 plant U-box 8 (.1) Lus10020077
[exp]
2.6 0.9034
AT5G42570 B-cell receptor-associated 31-... Lus10035283
[exp]
2.8 0.9014
AT2G22500 UCP5, ATPUMP5, ... DICARBOXYLATE CARRIER 1, PLANT... Lus10009270
[exp]
3.7 0.9194
AT1G47750 PEX11A peroxin 11A (.1) Lus10029260
[exp]
4.0 0.9091
AT1G70780 unknown protein Lus10034416
[exp]
5.1 0.8655
AT3G57450 unknown protein Lus10042063
[exp]
6.0 0.8761
Lus10018622
[exp]
7.2 0.8880
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10012224
[exp]
7.5 0.8835

Lus10041025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.