Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32000 466 / 3e-163 Protein kinase superfamily protein (.1.2) AT2G25220 458 / 2e-160 Protein kinase superfamily protein (.1.2) AT5G11020 455 / 8e-159 Protein kinase superfamily protein (.1) AT1G80640 364 / 3e-123 Protein kinase superfamily protein (.1.2) AT3G58690 277 / 1e-89 Protein kinase superfamily protein (.1) AT1G54820 276 / 1e-88 Protein kinase superfamily protein (.1) AT4G02010 263 / 7e-81 Protein kinase superfamily protein (.1) AT1G61860 254 / 8e-81 Protein kinase superfamily protein (.1) AT5G13160 253 / 2e-79 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G24790 246 / 2e-78 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001937 [exp] 630 / 0 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 413 / 1e-141 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 407 / 8e-141 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 405 / 4e-139 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10001939 [exp] 283 / 1e-93 AT4G32000 175 / 7e-52 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 284 / 3e-91 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 273 / 6e-87 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10033606 [exp] 261 / 2e-83 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 258 / 3e-82 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260100 [exp] 583 / 0 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.018G022300 [exp] 556 / 0 AT2G25220 402 / 1e-137 Protein kinase superfamily protein (.1.2) Potri.001G048500 [exp] 449 / 3e-156 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 412 / 1e-142 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 288 / 8e-94 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 284 / 5e-92 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 281 / 7e-91 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 270 / 3e-83 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 256 / 1e-81 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 253 / 2e-80 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041026 pacid=23179581 polypeptide=Lus10041026 locus=Lus10041026.g ID=Lus10041026.BGIv1.0 annot-version=v1.0 ATGAAGCAACCGTCATTGTCTTCTCTTCTTTCTCCGGTTCCCCAGCCTGCTCTATCTACTACTTCCATGGCCGCTTTCTCTCCAGGAATTCAATTGCAGC TGGGGAATGATGAACAGCACAAGGAGTTGGACAAGAAAACCCACCTCGTACTCGCTGTTGCTTGCATTGTCATGGCTGTCATTATCCTTCTCTTTGCCTC CGTTTGTTTCATCTTTTACTGCAAGCTTCTCCGCAAGAGAAGAAGAAGAAGAAACACCCAAAACCCAGATGTAGAGAAGAAAGGGATATTGTTGTTCAGC AAATTCAGTTCCTTGAGGAGGATGCCTAGCAGCAAGAAATCTGTTCCATTGATTGACTACAAGGCACTAGAGAAAGGCACTGAGAATTTCATGGAGGAGA ATCTGTTGGGGAGGGGTGGATTTGGGCTTGTTTACAAAGCCACTATGGATGACAACTCTGTAGTGGCCGTTAAGAAACTCGATTGCGGAACTCAAGATGC CAAACGAGAATTTGAGAATGAGGTGGGCTTGTTGTGCAAATTTCAGCACCCAAACATCATTTCCATGGTGAGTTATGGCGTTCATGAGCACATGGGATTC ATTGTCTATGAATTGATGCCTAATGGCTCACTTGAAGATCTTCTTCATGGGCCATCTCGTGGGTGTAAATTAACATGGCATATGCGTCTGAAAATTGCTC TGGATACAGCAAGAGGATTAGAGTATTTGCATGAATTCTGCAAGCCAGCAGTCATCCATAGAGATCTGAAATCCTCCAATATCCTTCTGGATTCCAATTT TCATGCTAAGCTCTCGGATTTCGGACTAGCCGTGGCTGATAACACTCACAACAAGAACAAGCTTAAGCTTTCAGGGACAGTCGGCTATGTTGCACCTGAG TACATGCTTGATGGTGAGTTGACAGAGAAAAGTGATGTATATGCGTTTGGGATAGTGCTGCTGGAGCTTCTATTGGGAAGAAGGCCAGTTGAGAAACTGG CACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCTAAGCTGACTAATAGAGAAATGCTCCCAAACATTGTGGATCCAGTGATTAAAGACAGAAT TGATGACAAGTACTTGTTCCAGGTAGCTGCGGTGGCTGTGCTATGTGTGCAACCAGAACCTTCTTACCGGCCGCTCATTACCGACGTGGTACACTCTTTG ATTCCTCTGCTTCCGGTTGAAATGGGAGGGACTCTAAGGACCATGTCGATAGGTGGTGGTTGTTGA
AA sequence Show only first row Show all	>Lus10041026 pacid=23179581 polypeptide=Lus10041026 locus=Lus10041026.g ID=Lus10041026.BGIv1.0 annot-version=v1.0 MKQPSLSSLLSPVPQPALSTTSMAAFSPGIQLQLGNDEQHKELDKKTHLVLAVACIVMAVIILLFASVCFIFYCKLLRKRRRRRNTQNPDVEKKGILLFS KFSSLRRMPSSKKSVPLIDYKALEKGTENFMEENLLGRGGFGLVYKATMDDNSVVAVKKLDCGTQDAKREFENEVGLLCKFQHPNIISMVSYGVHEHMGF IVYELMPNGSLEDLLHGPSRGCKLTWHMRLKIALDTARGLEYLHEFCKPAVIHRDLKSSNILLDSNFHAKLSDFGLAVADNTHNKNKLKLSGTVGYVAPE YMLDGELTEKSDVYAFGIVLLELLLGRRPVEKLAPAQCQSIVTWAMPKLTNREMLPNIVDPVIKDRIDDKYLFQVAAVAVLCVQPEPSYRPLITDVVHSL IPLLPVEMGGTLRTMSIGGGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	0	1
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	1.7	0.8848
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	2.4	0.8919
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	4.5	0.8810
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10014914 [exp]	5.7	0.8658
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	6.0	0.8931
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	7.4	0.8786
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	11.5	0.8642
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	16.5	0.8764
AT5G36230			ARM repeat superfamily protein...		Lus10029666 [exp]	17.5	0.7906
AT1G08590			Leucine-rich receptor-like pro...		Lus10000814 [exp]	18.2	0.8740

Compare expression of checked genes

Lus10041026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.