Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32060 167 / 6e-49 calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005346 [exp] 301 / 1e-100 AT4G32060 536 / 0.0 calcium-binding EF hand family protein (.1.2) Lus10040000 [exp] 157 / 2e-45 AT4G32060 481 / 9e-167 calcium-binding EF hand family protein (.1.2) Lus10008807 [exp] 154 / 8e-44 AT4G32060 478 / 8e-166 calcium-binding EF hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023400 [exp] 188 / 4e-57 AT4G32060 607 / 0.0 calcium-binding EF hand family protein (.1.2) Potri.018G118116 [exp] 166 / 6e-51 AT4G32060 278 / 2e-91 calcium-binding EF hand family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041027 pacid=23180044 polypeptide=Lus10041027 locus=Lus10041027.g ID=Lus10041027.BGIv1.0 annot-version=v1.0 ATGAGAATCAAAAGCTCACAGAGTCTACAAAACCGTTTACTTCAATCAGGAGTCTGTCCGCAAACCGCCGGCGCCGCTAGGAAACACACACAGCGGAGAA ATTTGATACAAGTGTTGAAATGTAATTGGGTTTCAAATTTCATTCATCATCTTTACTTGTTCGGTGCCACTCCTGTTCTTCTAGCAACTTGTCACCCAAA TTTCTTGGCTAAGGATTTTGCGTTATCCATGGTTTCTTCTGCTGACTTGGGTCATTTAGATGGATTACTTCGTCGGGTGGATACACTAAACAATGACGGG CATCTACGCGACATGCAAGTAACTTATGAGGAATTCATGGATTTTGCCGAGTTACGTAAGAAGCTACAGCCTTTTGCTTTGGCCCTTTTCAGTTCCGGGA AAGTAAATGGCTTGTTAACAAAAGAGGATTTCCAGCGACCTGCATCTCAGGTCTGCGGCATTCCACTCTCCGATAATGTGGTGGATATCACATTCCACGT GTTTGATTTTGATGGTGATGGACATTTAAGCTCAAAGGAATTTGTAAGAGTATTACACAGACGAGAAAAGCAGATTGGTCAGCCCAGGGAAACAGGAATG ATGGGAGCTCTGTTTTGCTTCTTGAACCGGTCCTCCTCCAATGACTCCTTTGAACGTCTGGTTTCATGA
AA sequence Show only first row Show all	>Lus10041027 pacid=23180044 polypeptide=Lus10041027 locus=Lus10041027.g ID=Lus10041027.BGIv1.0 annot-version=v1.0 MRIKSSQSLQNRLLQSGVCPQTAGAARKHTQRRNLIQVLKCNWVSNFIHHLYLFGATPVLLATCHPNFLAKDFALSMVSSADLGHLDGLLRRVDTLNNDG HLRDMQVTYEEFMDFAELRKKLQPFALALFSSGKVNGLLTKEDFQRPASQVCGIPLSDNVVDITFHVFDFDGDGHLSSKEFVRVLHRREKQIGQPRETGM MGALFCFLNRSSSNDSFERLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32060			calcium-binding EF hand family...		Lus10041027 [exp]	0	1
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	5.1	0.9326
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	5.5	0.9320
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	6.9	0.9020
AT5G26200			Mitochondrial substrate carrie...		Lus10026468 [exp]	9.5	0.8953
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	10.8	0.9018
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	11.1	0.9259
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	16.7	0.9077
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	18.5	0.9045
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Lus10022120 [exp]	19.2	0.9085
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	19.2	0.9174

Compare expression of checked genes

Lus10041027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.