Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25265 583 / 0 unknown protein AT2G25260 504 / 1e-180 unknown protein AT5G13500 447 / 6e-158 unknown protein AT3G01720 67 / 5e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005347 [exp] 706 / 0 AT5G25265 612 / 0.0 unknown protein Lus10009691 [exp] 444 / 1e-156 AT5G13500 541 / 0.0 unknown protein Lus10036037 [exp] 443 / 3e-156 AT5G13500 542 / 0.0 unknown protein Lus10014878 [exp] 65 / 3e-11 AT3G01720 1197 / 0.0 unknown protein Lus10022320 [exp] 63 / 2e-10 AT3G01720 1181 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023100 [exp] 633 / 0 AT5G25265 583 / 0.0 unknown protein Potri.006G258800 [exp] 625 / 0 AT5G25265 577 / 0.0 unknown protein Potri.001G028100 [exp] 454 / 1e-160 AT5G13500 570 / 0.0 unknown protein Potri.003G195600 [exp] 435 / 5e-153 AT5G13500 532 / 0.0 unknown protein Potri.001G275600 [exp] 434 / 2e-152 AT5G13500 543 / 0.0 unknown protein Potri.009G070000 [exp] 432 / 1e-151 AT5G13500 515 / 0.0 unknown protein Potri.001G336400 [exp] 70 / 1e-12 AT3G01720 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041028 pacid=23179701 polypeptide=Lus10041028 locus=Lus10041028.g ID=Lus10041028.BGIv1.0 annot-version=v1.0 ATGGGGTGCGGCAATCTATTCTTCACTGCACTTATCAGTTTCTCGGTTGCTCTCATCACTTACAACATTCTAATCGCAGCTAATGCACCTCTCAAGCAGG ACCTTCCTGGTCCTTCCACTCTTTCCTCCATCGACCCCATCATCCGGATGCCCAGGGACGAAAGATCCAGAAGATTCGGCGGATCCTCCACCCATAAGAA GCAGCAGCGTCTTTTCCACACCGCCGTTACTTCCTCTGATTCTGTTTACAACACATGGCAGTGTAGGGTGATGTACTACTGGTTCAAGAAGTTCCAGGAT GGTCCCAACTCCCAGATGGGCGGCTTCACCAGGATTTTGCACTCCGGTAAGCCCGATAAGTTCATGGACGAGATCCCCACTTTCGTTGCTCAGCCGCTTC CGTCCGGCATGGATCAGGGTTATATAGTCCTCAATAGACCATGGGCATTTGTGCAATGGCTTCAGCAAGCAGATATCAAAGAAGATTATATACTGATGTC AGAGCCTGATCATATTATTGTTAAACCCATACCAAACTTGAGCAAAGATGGTCTTGGAGCTGCCTTCCCTTTCTTCTACATTGAGCCTAAAAAGTATGAA GCAGTGCTGCGCAAGTACTTCCCTGAGGAGAAAGGTCCAGTCACTAATATTGATCCTATAGGGAATTCCCCCGTCATTGTAGGAAAGGAGTCTCTTAAGA AGATAGCTCCGACTTGGATGAATGTATCTTTGGCAATGAAAAAAGATCCTGAAACGGACAAAGCCTTTGGTTGGGTGCTTGAAATGTATGCTTATGCTGT TGCATCTGCTCTTCACGGTGTTGGCAATATCTTGTACAAGGACTTCATGATTCAGCCTCCATGGGATAAAGAAGTTGGTACCAAGTTCATAATCCATTAT ACGTATGGATGTGACTATGACATGAAGGGCAAGTTAACTTATGGGAAAATAGGTGAATGGAGGTTTGACAAAAGATCTTATGACACTGTTCCACCTCCAA GAAATCTCCCCCTGCCTCCTCCTGGTGTTCCTGAAAGTGTGGTGACACTGGTGAAAATGGTGAATGAAGCCACAGCAAACATTCCAAATTGGGGATCATA G
AA sequence Show only first row Show all	>Lus10041028 pacid=23179701 polypeptide=Lus10041028 locus=Lus10041028.g ID=Lus10041028.BGIv1.0 annot-version=v1.0 MGCGNLFFTALISFSVALITYNILIAANAPLKQDLPGPSTLSSIDPIIRMPRDERSRRFGGSSTHKKQQRLFHTAVTSSDSVYNTWQCRVMYYWFKKFQD GPNSQMGGFTRILHSGKPDKFMDEIPTFVAQPLPSGMDQGYIVLNRPWAFVQWLQQADIKEDYILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE AVLRKYFPEEKGPVTNIDPIGNSPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDFMIQPPWDKEVGTKFIIHY TYGCDYDMKGKLTYGKIGEWRFDKRSYDTVPPPRNLPLPPPGVPESVVTLVKMVNEATANIPNWGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25265			unknown protein		Lus10041028 [exp]	0	1
AT5G25265			unknown protein		Lus10005347 [exp]	2.0	0.9030
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	4.5	0.9012
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	5.9	0.8813
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	7.1	0.8550
					Lus10033509 [exp]	7.3	0.8948
AT5G01970			unknown protein		Lus10031947 [exp]	8.9	0.8617
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	10.8	0.8930
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	10.8	0.8615
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	11.2	0.8660
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	12.6	0.8373

Compare expression of checked genes

Lus10041028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.