Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23740 275 / 3e-96 RPS11-BETA ribosomal protein S11-beta (.1) AT3G48930 273 / 2e-95 EMB1080 embryo defective 1080, Nucleic acid-binding, OB-fold-like protein (.1) AT4G30800 271 / 1e-94 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005348 [exp] 291 / 1e-102 AT5G23740 282 / 2e-99 ribosomal protein S11-beta (.1) Lus10030113 [exp] 290 / 2e-102 AT5G23740 282 / 4e-99 ribosomal protein S11-beta (.1) Lus10001681 [exp] 287 / 3e-101 AT5G23740 281 / 7e-99 ribosomal protein S11-beta (.1) Lus10008806 [exp] 288 / 1e-92 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115400 [exp] 281 / 1e-98 AT5G23740 271 / 5e-95 ribosomal protein S11-beta (.1) Potri.014G053300 [exp] 277 / 2e-97 AT5G23740 271 / 1e-94 ribosomal protein S11-beta (.1) Potri.002G140400 [exp] 277 / 4e-97 AT5G23740 266 / 8e-93 ribosomal protein S11-beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00366 [flax] [poplar] Ribosomal_S17 Ribosomal protein S17
Representative CDS sequence Show only first row Show all	>Lus10041029 pacid=23179602 polypeptide=Lus10041029 locus=Lus10041029.g ID=Lus10041029.BGIv1.0 annot-version=v1.0 ATGGCCGAGCAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTCCTTAGTTCTAAGAAGTCTTCGAAAGGGAAGAGGCCTGGAAAAGGAGGCAACC GTTTCTGGAAGAGCGTCGGCTTGGGTTTCAAGACTCCTAGAGAAGCAATTGAAGGGACATACATTGATAAGAAATGTCCGTTTACTGGAACTGTTTCTAT CAGAGGCCGTATCATTGCCGGTACTTGTCACAGTGCCAAGATGATGAGAACCATTGTTGTGAGGCGCAATTACCTTCATTACATAAAGAAATACCAAAGG TATGAGAAGAGGCATTCCAACATCCCAGCACATGTATCTCCATGCTTCCGTGTGAAGGAGGGTGACCATGTCATCATTGGGCAATGCAGGCCTCTATCGA AGACTGTAAGGTTCAACGTGCTGAAAGTGGTTCCTGCTGGTTCTTCCGGCGGAGGGAAGAAAGCATTCACCGGCATGTGA
AA sequence Show only first row Show all	>Lus10041029 pacid=23179602 polypeptide=Lus10041029 locus=Lus10041029.g ID=Lus10041029.BGIv1.0 annot-version=v1.0 MAEQTEKAFLKQPKVFLSSKKSSKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMMRTIVVRRNYLHYIKKYQR YEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVVPAGSSGGGKKAFTGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	0	1
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	1.0	0.9493
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	2.0	0.9276
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	2.0	0.9196
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	3.2	0.9089
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	3.5	0.9045
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	4.2	0.9251
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	6.5	0.8762
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	6.5	0.9000
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	6.7	0.8910
AT5G56940			Ribosomal protein S16 family p...		Lus10025984 [exp]	7.1	0.8701

Compare expression of checked genes

Lus10041029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.