Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19800 452 / 5e-153 MIOX2 myo-inositol oxygenase 2 (.1) AT5G56640 440 / 1e-148 MIOX5 myo-inositol oxygenase 5 (.1) AT1G14520 439 / 4e-148 MIOX1 myo-inositol oxygenase 1 (.1.2) AT4G26260 435 / 1e-146 MIOX4 myo-inositol oxygenase 4 (.1.2) AT5G11030 382 / 4e-122 ALF4 aberrant lateral root formation 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006198 [exp] 600 / 0 AT2G19800 452 / 3e-161 myo-inositol oxygenase 2 (.1) Lus10012923 [exp] 438 / 2e-147 AT4G26260 489 / 2e-175 myo-inositol oxygenase 4 (.1.2) Lus10035005 [exp] 434 / 8e-146 AT4G26260 477 / 7e-171 myo-inositol oxygenase 4 (.1.2) Lus10006197 [exp] 363 / 4e-119 AT5G11030 122 / 3e-31 aberrant lateral root formation 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259600 [exp] 554 / 0 AT5G11030 491 / 1e-167 aberrant lateral root formation 4 (.1.2.3) Potri.017G100200 [exp] 473 / 2e-161 AT2G19800 482 / 4e-173 myo-inositol oxygenase 2 (.1) Potri.008G144500 [exp] 439 / 3e-148 AT1G14520 514 / 0.0 myo-inositol oxygenase 1 (.1.2) Potri.018G069700 [exp] 434 / 2e-146 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF05153 [flax] [poplar] MIOX Myo-inositol oxygenase CL0237 [flax] [poplar] PF08568 [flax] [poplar] Kinetochor_Ybp2 Uncharacterised protein family, YAP/Alf4/glomulin
Representative CDS sequence Show only first row Show all	>Lus10041030 pacid=23179745 polypeptide=Lus10041030 locus=Lus10041030.g ID=Lus10041030.BGIv1.0 annot-version=v1.0 ATGACAATCCAGTCCGCCATTGTTGATCGGCAGCCTCTAATTACAGGTTTCGAGTTGGATCAAAAGAAGATAAAGCTGATCGACACTGAAGCGGATCATA AGCTGGTGGAGTCGGGGGAATTCAGGGTGCCAGATAACAACGCGTTTGGCGGATCCTTCAGGGATTACGAGAATGCGAACAGCGAAAGGCATAAGCTGGT CGAGGAACTGTACCGGCAGCAGCACATTCACCAGACGTATGAGTTCGTAAAAACGATGAGGGAAGAGTACGGGAAATTGGAGAAGGGGGAGATGAGCATA TGGGAATGCTGTGAGTTGCTCAACGATATAGTGGATGATAGTGATCCTGATTTGGATGAGCCCCAGATCATGCACTTGCTCCAGTCTGCCGAAGCCATCC GTAAAGACTATCCCGACGAGGACTGGCTTCACTTAACTGCTCTCATCCACGATCTGGGGAAAATCCTGATCCATCCAACCTTTGGAGGATTGCCGCAATG GGCAGTAGTTGGCGATACTTACCCAGTGGGTTGCGCTTTCGACGAAACCGCCATTGTTCACCACAGGCACTTGAAGGAGAATCCAGATTACGAGAATCCA CAATACAACACCAAGACTGGTGTGTACAGTGAAGGATGTGGGCTGAACAATGTGATGATGACATGGGGTCATGATGACTATATGTATTTGGTTGCCAAGC GAAACGGCACCACTTTGCCATCTCCTGCCTTGTTTATCATCCGATATCACTCCTTTTATCCACTGCACAAAGGGGATGCATACGGACACTTGATGAACGA TGAAGATAGGGACAACTTGAAATGGTTGCAAATATTCAACAAATATGACCTGTACAGCAAAAGCAAGGTTCCAATTGAGATTGAAAAGGTTAAACCCTAC TATCTCTCCCTTATTGACAAGTCAATTGAGGGAGGAGAAGATACCTCAGGACTTCCTCAGTTAGTGAGCTTTCTCGATGCCGTCTCTGATGCCGCAGTCT TAGAACCTGAAAACGGGAATGCAAAGAGCAATGCAGTTGAACTCCTTGCCGAGATTCAAAGATTTCTTTTCTCCTCTTCGCTGGACCAGGCGATTGTCGA TGCACTCTCGTTTGAATTGCCAAAAGCAGTTCCGAAGTTTGCAAGGTTTTCTGATAAGTGCTTGGAGATAGCCGATGCTATTATTGATTGGTTTGTTGGT AATTGTAAACCTCGGGATATGCTCTCCGTTCTATGTGAGACATTGGAGTTGTTAAGCACCGATGATGATCCAGGTTCTGCTGCTCCTATCCTGACCGGAC TTTCCAAAGTATTCATTTCCATTGAACGGCGTCATTTTGAGCAAGCAAAAGTGGTAGTTCCTATTGTCTTAAAAGTGCTAAAAGCTTCGTCACTGGAGCT AGCTGATAGTGATGCAGAAAGCATGCGTTTATTTAAGAGAGCTTTGTTAATGGTGGATTCTATTATTGCAGCTAGTACGAAACTGGACCATGGACTATGT GAGAAACTTCAGTCTCTTATGGCTTTATTCATACTCCAAACTATGGCTCTTGTGTCATCCATCATACCCTCTGGTCTATCGGACCATATTCTTCTGGTGT CAGACATGTCAAAAGTTCTTCCACAATGTGGCTTGACATATCTTGGTTTGCTAACTGGATCTGATATCCGTGTCAAGACTAATCTTACTACTGAAGCTGC TCTAGTCTGCATAGAGGAAGAAGACGATGTGATGACTTCATTTTCGGACATCAAGCAAGGTGCAGCTCTTTCAGTTATTTGGGGCCACGTCTATGACAAG ATTGCCCAAGAAGCAGGGGAGAATATGTCTGCTGTTAAGGATGAGCTTAAACACAACCAAGTTAAGAGGTGGGAAGCAATAAGCATGTTAAAATACGTAC TTGCGTCAGTGAATCTTCCAGTGGATATAAAAAGGCATACAATCGATTTCTTACTTTCTATTACTGATGGAAGTATCACACTAAATTGCCATGATGGAAT AACAGACTACATAACTTACATTCCTGGATTGTTTGCCATGATGGAAGCAATTACCAAGGTCATCATGTATGCTCCTGATTCTGCACTGAGGAAAAATGCT TTTGAAGGACTGAAAAGAGTACTTGCTGATACTCCAATCTCCGAGAGGATTGACATCCTACAAGCTCTGATAACAAATTCCGATTCTTCATCCATGACTG CTATTCTGTTGGATCTTGTCAGAGGGGAGCTGCAGAAAGAAAACAGAGCAGAATGCAGGAATCATTTTTGGAGTGAGAGAATCCTAGAACTCGTGGAGCT AGTTTTACGGCCGGAGAGAGGGCCTCCATCCTTTCCTGAGCATGGTGACGCGGTTCTCTCTGCGCTCAATCTCTACAGATTTGTGATAATGAGAGAGTCA GCAGGGAAAACCAACCAGACGGGAGTATTGACGAGGAGTAATATGGTCAAGGCATACAATGAATGGCTTCTTCCTCTTCGGACACTTGTGAATGGGATAA TGGCAGAGCCTGAGAATGATCGGGACGAGCTTGCAAGCTCGCTTCTTAATCCCGTTGAACTAGTTCTGTACCGTTGTATTGAGCTTGTAGAAGAGAACTT ATCAGCAAACCAGAACTCAACCTAG
AA sequence Show only first row Show all	>Lus10041030 pacid=23179745 polypeptide=Lus10041030 locus=Lus10041030.g ID=Lus10041030.BGIv1.0 annot-version=v1.0 MTIQSAIVDRQPLITGFELDQKKIKLIDTEADHKLVESGEFRVPDNNAFGGSFRDYENANSERHKLVEELYRQQHIHQTYEFVKTMREEYGKLEKGEMSI WECCELLNDIVDDSDPDLDEPQIMHLLQSAEAIRKDYPDEDWLHLTALIHDLGKILIHPTFGGLPQWAVVGDTYPVGCAFDETAIVHHRHLKENPDYENP QYNTKTGVYSEGCGLNNVMMTWGHDDYMYLVAKRNGTTLPSPALFIIRYHSFYPLHKGDAYGHLMNDEDRDNLKWLQIFNKYDLYSKSKVPIEIEKVKPY YLSLIDKSIEGGEDTSGLPQLVSFLDAVSDAAVLEPENGNAKSNAVELLAEIQRFLFSSSLDQAIVDALSFELPKAVPKFARFSDKCLEIADAIIDWFVG NCKPRDMLSVLCETLELLSTDDDPGSAAPILTGLSKVFISIERRHFEQAKVVVPIVLKVLKASSLELADSDAESMRLFKRALLMVDSIIAASTKLDHGLC EKLQSLMALFILQTMALVSSIIPSGLSDHILLVSDMSKVLPQCGLTYLGLLTGSDIRVKTNLTTEAALVCIEEEDDVMTSFSDIKQGAALSVIWGHVYDK IAQEAGENMSAVKDELKHNQVKRWEAISMLKYVLASVNLPVDIKRHTIDFLLSITDGSITLNCHDGITDYITYIPGLFAMMEAITKVIMYAPDSALRKNA FEGLKRVLADTPISERIDILQALITNSDSSSMTAILLDLVRGELQKENRAECRNHFWSERILELVELVLRPERGPPSFPEHGDAVLSALNLYRFVIMRES AGKTNQTGVLTRSNMVKAYNEWLLPLRTLVNGIMAEPENDRDELASSLLNPVELVLYRCIELVEENLSANQNST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	0	1
AT3G53630			unknown protein		Lus10024421 [exp]	1.0	0.9299
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	2.8	0.9084
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	2.8	0.9229
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	3.2	0.8900
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	6.0	0.8760
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	6.7	0.9059
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	8.1	0.8829
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	8.8	0.9130
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	9.5	0.8961
					Lus10010883 [exp]	9.9	0.8905

Compare expression of checked genes

Lus10041030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.