Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 500 / 1e-178 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 269 / 1e-88 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT2G45400 269 / 7e-88 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G61720 257 / 1e-83 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 241 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 233 / 1e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 226 / 6e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 226 / 1e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 224 / 3e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 212 / 2e-66 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006195 [exp] 396 / 3e-140 AT5G42800 269 / 6e-90 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 278 / 8e-92 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 262 / 2e-85 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 243 / 3e-78 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10039595 [exp] 232 / 5e-74 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 229 / 5e-73 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 229 / 6e-73 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 228 / 3e-72 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 227 / 4e-72 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229500 [exp] 521 / 0 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 517 / 0 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 315 / 1e-106 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 308 / 6e-104 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 305 / 2e-102 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 305 / 3e-102 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 304 / 3e-102 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 303 / 9e-102 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 300 / 8e-101 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 298 / 8e-100 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10041031 pacid=23179677 polypeptide=Lus10041031 locus=Lus10041031.g ID=Lus10041031.BGIv1.0 annot-version=v1.0 ATGGTTAGTGAAATGGTTTGCAGCGCTGTTGGGGAAAACAAGACTGTCTGCGTAACGGGGGCTTCTGGGTTCATCGGGTCATGGCTTACGATGAGGTTGC TTGAACAAGGATATACCGTTCGAGCCACAGTTCGTAACCCTGAGGATGAGAGGAAAGTGAAGCATCTAGTGGAGCTGCCAAACGCAAAGACTCATTTGAC GTTGTGGAAAGCCGACCTTTCGGTGGCAGGGAGCTTCGACGACGCTATCCATGGCTGCTCCGGTGTGTTTCACGTGGCCACTCCGATGGATTTCGAGTCC TCCGACCCTGAGAATGAAGTGATAAAGCCGACGGTGGAAGGGGTGCTGGACATAATGAGAGCAAGCGCCAAGGCCAAAACAGTAAAGAGAATAGTGTTCA CTTCGTCGGCGGGGACAGTGGACGTGGAAGAGCACCATAAAGCAGTCTACGACGAGAACGATTGGAGCGATCTCGATTTCGTCCAAAGAGTTAAAATGAC CGGATGGATGTACTTTGTGTCGAAGAGCTTAGCAGAGAAAGAGGCCTGGAAATTTGCAGAGGAGAACAACTTGGATTTCATAAGCATCATTCCAAGTGTG GTGGTGGGGCCTTTCATTATGCCCTCCATGCCTCCCAGCCTCATCACTGCTCTCTCCCTCATCACCAGGAATGAAGCACACTATTCGATCATAGAGCAGG GGCATTTCGTGCACTTGGACGACCTCTGCAACGCCCACATCTTCTTGCTGGAGCATCCAAATGCTCAGGGCCGTTACATGTGCAACTCTCACGACATCAA CATTTACCAACTTGCCCACTTTCTATCCAACAAATACCCCGACTACAACATCCCAACAGAGTTCGAAGGGATCGAAAAGGGAAAGCTGAAGAAGGTGATT TTCTCGTCCGAGAAGGTGAAGAAGTTAGGATTCGAGTTCAAGTACGGACTGGAGGAGATGTTTGAAGGAGCTGTGGAGACTTGCAAGGAAAAGGGTTTGC TTCCATCATCGACTGTTGTGAAGGCTAGTGGCCATGTTGAAAACCATTCGCTGTAG
AA sequence Show only first row Show all	>Lus10041031 pacid=23179677 polypeptide=Lus10041031 locus=Lus10041031.g ID=Lus10041031.BGIv1.0 annot-version=v1.0 MVSEMVCSAVGENKTVCVTGASGFIGSWLTMRLLEQGYTVRATVRNPEDERKVKHLVELPNAKTHLTLWKADLSVAGSFDDAIHGCSGVFHVATPMDFES SDPENEVIKPTVEGVLDIMRASAKAKTVKRIVFTSSAGTVDVEEHHKAVYDENDWSDLDFVQRVKMTGWMYFVSKSLAEKEAWKFAEENNLDFISIIPSV VVGPFIMPSMPPSLITALSLITRNEAHYSIIEQGHFVHLDDLCNAHIFLLEHPNAQGRYMCNSHDINIYQLAHFLSNKYPDYNIPTEFEGIEKGKLKKVI FSSEKVKKLGFEFKYGLEEMFEGAVETCKEKGLLPSSTVVKASGHVENHSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10041031 [exp]	0	1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	2.6	0.8630
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	8.2	0.8512
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	9.2	0.8305
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10041370 [exp]	10.2	0.7911
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028799 [exp]	15.4	0.7344
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	18.8	0.7889
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	19.4	0.8343
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	19.6	0.7785
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	22.0	0.7945
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025234 [exp]	23.8	0.7839

Compare expression of checked genes

Lus10041031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.