Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32140 513 / 0 EamA-like transporter family (.1) AT3G07080 52 / 6e-07 EamA-like transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006194 [exp] 634 / 0 AT4G32140 610 / 0.0 EamA-like transporter family (.1) Lus10026249 [exp] 248 / 7e-79 AT4G32140 320 / 3e-107 EamA-like transporter family (.1) Lus10042422 [exp] 244 / 4e-74 AT4G32140 390 / 3e-130 EamA-like transporter family (.1) Lus10011864 [exp] 73 / 9e-14 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 41 / 0.001 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024700 [exp] 536 / 0 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G257000 [exp] 517 / 0 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.006G266400 [exp] 358 / 8e-122 AT4G32140 397 / 6e-137 EamA-like transporter family (.1) Potri.014G189500 [exp] 82 / 9e-17 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10041032 pacid=23179894 polypeptide=Lus10041032 locus=Lus10041032.g ID=Lus10041032.BGIv1.0 annot-version=v1.0 ATGGGTTGGAGGTATAAGGCTGGTTTGTTCTTGATAGCAGCTGTTGTTATTATATGGGTCACCTCTGCTGAAGTTACCCAGGGTATATTTACGGATTATA AGCAACCATTCGCCGTGACATATCTGGGGGCATCTCTTATGGTAGTTTACCTTCCAATAGCATTCCTTAAGGACTGGCTGCACAAGTATTTGAACCGCCA CTCTTCAAAGAGTGGTAAAGGTTCGGGAAAAACAACCGAGCCTTCGGATGGATTTGCCTCTCCTCGGAACCTGAAGATCGTTGAAATGGAACTTCAGGGA ACTTTGACCAAGAAAGACAGCGACTTATCCCTTTCAATTGAAGACGAGGACGAGCCCCTGGTCCCTAGAAGCAAAGATGATCTCAATGTACTGAAAGTTA ACAAAGAACTATCCAACAGACAAGTTGCTACTTATGGCTTCTACATTGCACCAATTTGGTTTGTCACTGAGTACCTATCAAATGCTGCTCTAGCTCGTAC AAGTGTTGCAAGTACAACAGTTTTGTCATCAACTTCAGGACTTTTTACACTCTTCCTGGGTGCCTTCCTAGGAGAAGACACTTTGAGCTTACCAAAAGTT GTAGCTGTCTTGGTGAGTCTGGCTGGTGTTGTCATGACTACTTTTGGGAAAACCTGGGCTGCTGATGAGTCCCAACTAAGTTCCTCCAACGATGGGGAAC ACACTCTTGTTGGCGACTTATTTGGTCTCTTATCAGCAGTATCGTATGCACTATTTACAGTGCTTCTCAAGAAGTTTGCCGGCGAAGAAGGGGAGAGAGT TGATGTGCAGAAATTGTTTGGGTACATCGGTTTGTTTACCCTTGTAGCCCTATGGTGGCTTGTGTGGCCGTTGACTGCCCTGGGAATAGAGCCCAAGTTC ACGATCCCGCATTCTGCAAAAATGGATGAAGTTGTTCTCGCTAATGGCTTCATTGGGAGTGTCCTCTCTGATTATTTTTGGGCACTATGCGTCGTATGGA CGACACCATTGGTGGCTACTTTGGGTATGTCACTGACAATCCCGCTTGCTATGGTGGCTGACATTGTTATACATGGTCGTCACTATTCGGCGATTTACAT TCTTGGCTCTGTTCAGGTGTTTGGTGGATTTGTGATAGCTAATCTTTCAGATCGTCTGTCGAAAACTCTCGGGTTGTAG
AA sequence Show only first row Show all	>Lus10041032 pacid=23179894 polypeptide=Lus10041032 locus=Lus10041032.g ID=Lus10041032.BGIv1.0 annot-version=v1.0 MGWRYKAGLFLIAAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIAFLKDWLHKYLNRHSSKSGKGSGKTTEPSDGFASPRNLKIVEMELQG TLTKKDSDLSLSIEDEDEPLVPRSKDDLNVLKVNKELSNRQVATYGFYIAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFLGAFLGEDTLSLPKV VAVLVSLAGVVMTTFGKTWAADESQLSSSNDGEHTLVGDLFGLLSAVSYALFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKF TIPHSAKMDEVVLANGFIGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADIVIHGRHYSAIYILGSVQVFGGFVIANLSDRLSKTLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	0	1
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10014225 [exp]	1.7	0.9298
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	2.4	0.9327
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	3.0	0.9388
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	4.0	0.9254
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	8.5	0.9113
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	8.7	0.9083
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	10.2	0.9168
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	15.7	0.9112
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	17.5	0.8737
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	18.3	0.9203

Compare expression of checked genes

Lus10041032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.