Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11100 659 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 640 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 268 / 1e-83 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 206 / 5e-60 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 205 / 1e-59 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 190 / 4e-54 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 161 / 2e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 160 / 2e-42 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G14590 66 / 3e-11 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT5G47710 61 / 6e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006193 [exp] 868 / 0 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 640 / 0 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 616 / 0 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 348 / 5e-116 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 244 / 8e-75 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10027709 [exp] 238 / 1e-74 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036532 [exp] 242 / 1e-73 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 196 / 4e-56 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014127 [exp] 195 / 1e-55 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025000 [exp] 725 / 0 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 650 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 637 / 0 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 254 / 1e-78 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 253 / 4e-78 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 209 / 7e-61 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 204 / 3e-59 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.010G223900 [exp] 201 / 7e-58 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 197 / 1e-56 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 192 / 7e-55 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10041034 pacid=23179654 polypeptide=Lus10041034 locus=Lus10041034.g ID=Lus10041034.BGIv1.0 annot-version=v1.0 ATGTCTTTCTTCGTGGGTTTCTTCATCGGAGTCTCCATCGGGATTCTCCTCATACTCGGATTAGCTCGTAACGAGTCCCTCCGTTCAGCTCGCCGCTCCG ACCTGGCTAAGACGGTGGCTGCTTTTGCGAGGATGACGGTGCAGGACTCCCGGAAAATTCTACCGGCGGAATTCTATCCATCATGGGTCGTCTTCTCCAA TAGACAAAAGATTCTAGAAGCTCCGAGTCTGAAGATGCATTTTGCCTCTCTTTATGGAAATGTGCAGTTAAGTTGGCTCAATCACCACCTAGACAAGATT TGGCCTTACGTTGATGCGGCAGCGTCAGAGTTGATAAGAAGCAATGTAGAGCCGATTCTAGAACAGTACAGACCAGCTATTCTATCATCTCTCAAATTCT CCAAGCTCACTCTTGGCACTGTTGCTCCTCAGTTCACTGGAATTACCATAATTGAAGAGGAAAGTGACTCTAAAGGAGTGACGATGGAGTTGGAGATGCA GTGGGATGGAAATCCAAATATTGTGCTTGCTATCAACACCAGAGTTGGTGTTGCCCTCCCTATACAGGTAAAAGATATTGGATTCACTGGGGTTTTCAGG TTAATCTTCAAGCCACTTGTTCCTGAGTTCCCTGGCTTTGCTGCTATTTCCTATTCTTTGAGGGAAAAGAAAAAACTGGATTTTAGACTTAAAGTCATTG GAGGGGAATTATCATCAATACCCGGGTTATCTGATGCTATTGAGGAAACTATAAAGGACGCTGTTGAAGATTCTATTACATGGCCAGTTAGGAAAATCAT ACCAATTTTGCCTGGCGACTACGAGGATTTGGAGTTGAAGCCTGAAGGAAAATTGGATGTGAAACTTGTGCAAGCCAAAGAGCTATCAAACAAAGACGTG ATAGGGAAATCAGATCCATTTGCAGTCTTGTTTGTGCGTCCACTACGTGACAGGACCAAAACCAGCAAAGTTATTAACAACCAATTGAATCCCATTTGGA ATGAGCACTTTGAGTTCATAGTCGAGGACGCATCCACACAGCATTTGACGATCAGAGTGTTTGATGATGAAGGGATTTCAGCTTCTGAACTCATTGGCCA GGCTCAGGTATCACTGAAGGATCTTGAGCATGGGAAAGTTAAGGACGTGTGGTTGAAACTAGTCAAAGATTTGGAGGTTCAGAGAGACAATAAGTACAGA GGCAAGGTGCATTTGGAGCTTCTATATGTTCCGTATGGCATGGACAGCAGCTTGAAGAACCCATTCAATCCGGATTTCCAATTGACGACACTGGAGAAGA CCATCAAGGGTGGAAATGAGGCCAGTGAAGAGCCTAACTTAACCTCAGCAGCATCTAGGAAGAACATGATCGTTCGAGGAGTGCTATCAGTCAATGTGGT GGCTGCCGAGGACTTGCCACCAGTAGATTTAATGGGGAAAGCGGATCCCTACGTTGTCCTCATAATGAAGAAATCTGACGCAAAAGCAAAAACCAGGGTG GTATAA
AA sequence Show only first row Show all	>Lus10041034 pacid=23179654 polypeptide=Lus10041034 locus=Lus10041034.g ID=Lus10041034.BGIv1.0 annot-version=v1.0 MSFFVGFFIGVSIGILLILGLARNESLRSARRSDLAKTVAAFARMTVQDSRKILPAEFYPSWVVFSNRQKILEAPSLKMHFASLYGNVQLSWLNHHLDKI WPYVDAAASELIRSNVEPILEQYRPAILSSLKFSKLTLGTVAPQFTGITIIEEESDSKGVTMELEMQWDGNPNIVLAINTRVGVALPIQVKDIGFTGVFR LIFKPLVPEFPGFAAISYSLREKKKLDFRLKVIGGELSSIPGLSDAIEETIKDAVEDSITWPVRKIIPILPGDYEDLELKPEGKLDVKLVQAKELSNKDV IGKSDPFAVLFVRPLRDRTKTSKVINNQLNPIWNEHFEFIVEDASTQHLTIRVFDDEGISASELIGQAQVSLKDLEHGKVKDVWLKLVKDLEVQRDNKYR GKVHLELLYVPYGMDSSLKNPFNPDFQLTTLEKTIKGGNEASEEPNLTSAASRKNMIVRGVLSVNVVAAEDLPPVDLMGKADPYVVLIMKKSDAKAKTRV V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	0	1
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	1.0	0.9413
					Lus10013650 [exp]	3.5	0.8930
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	3.9	0.8424
					Lus10022938 [exp]	6.3	0.8266
					Lus10013649 [exp]	6.3	0.8125
					Lus10008904 [exp]	7.0	0.7896
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	7.7	0.7216
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	8.4	0.7517
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	8.5	0.7886
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	8.5	0.8059

Compare expression of checked genes

Lus10041034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.