Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25340 132 / 1e-37 Ubiquitin-like superfamily protein (.1) AT4G32270 127 / 2e-35 Ubiquitin-like superfamily protein (.1.2) AT1G80060 107 / 7e-28 Ubiquitin-like superfamily protein (.1) AT3G07860 69 / 4e-14 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006187 [exp] 530 / 0 AT4G32270 141 / 5e-41 Ubiquitin-like superfamily protein (.1.2) Lus10012567 [exp] 86 / 5e-20 AT3G07860 205 / 3e-68 Ubiquitin-like superfamily protein (.1) Lus10041524 [exp] 65 / 3e-12 AT3G07860 184 / 3e-59 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255500 [exp] 186 / 1e-57 AT5G25340 164 / 9e-50 Ubiquitin-like superfamily protein (.1) Potri.002G015002 [exp] 79 / 1e-17 AT3G07860 178 / 1e-57 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041040 pacid=23179681 polypeptide=Lus10041040 locus=Lus10041040.g ID=Lus10041040.BGIv1.0 annot-version=v1.0 ATGAGTCTCGTTGATACGAGGATTGACCTTCGCAGTCCCGGTGGTACTCCAACGGAGTTTCTTCACCGCCGATCGAATTCCCTGCCGTTCCTTTCCTTGT ATGGTTTCTCAGACAGCGGAAGCTTTTCGTACAGTAAGCTACCGGCGAGACCTATTACGCTCTCGATTCTCAAGTTGGACGGCACTTGCTTCGATGTCGA AGTTAAGAATTCAGCGACGGTTGCTGAATTAAAGCATGCAGTGGAGGCTGCCTTCAGTTACATGCCGCAGAAGGGGCCTGGCAAGATCTCATGGCAGCAT GTTTGGGGACATTTCTGCTTGAGCTTCCATGGCCAAAAGCTGCTCTTTGAAGCCGACTCCATCAGCAACTTCGGCATTAGGGAGGGTGATCAGCTCCAAT TTATCCGGAATGTCTCAACCACCTTCACCTTCACAAAGAAGGGATCCATTAAAAGGATGTTGTCTACAGAAACAAACAAAATAACCCTTTTACTTTCTCA ATCTGTTGTCCTAATGAATGACTTACCGGGGGTAGTCTTCAGTTCACTAACAGCACCAAGAAGAGATGCTTCAGAAATAGAGCTTAATGCTGATGATGAT GCCTGTTTCAGTGACATGGAGAACGGAATCTTTCGACACGACGACAGCGAACAGAGCGACTTGGGGATGATAGAACTTCAAGAAGGAATCGACCCGAGCT TAGCAAGTCCATGGTTCCCTTACTCGAGGCTGTCACCAAAGGAATCGAAAAGAAAATTCAAGGTATCTCCCTCGAGATACGGGTGCGGCTTCTTCAGTGG CTTTAAGAACATCGCTCAGTTTTGTGGTACTCGGTACTAA
AA sequence Show only first row Show all	>Lus10041040 pacid=23179681 polypeptide=Lus10041040 locus=Lus10041040.g ID=Lus10041040.BGIv1.0 annot-version=v1.0 MSLVDTRIDLRSPGGTPTEFLHRRSNSLPFLSLYGFSDSGSFSYSKLPARPITLSILKLDGTCFDVEVKNSATVAELKHAVEAAFSYMPQKGPGKISWQH VWGHFCLSFHGQKLLFEADSISNFGIREGDQLQFIRNVSTTFTFTKKGSIKRMLSTETNKITLLLSQSVVLMNDLPGVVFSSLTAPRRDASEIELNADDD ACFSDMENGIFRHDDSEQSDLGMIELQEGIDPSLASPWFPYSRLSPKESKRKFKVSPSRYGCGFFSGFKNIAQFCGTRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25340			Ubiquitin-like superfamily pro...		Lus10041040 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	65.7	0.7401
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	70.7	0.7219
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001460 [exp]	77.0	0.7078
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	86.2	0.7277
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	104.1	0.6773
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	143.0	0.6977
					Lus10015674 [exp]	243.4	0.6884
AT4G33590			unknown protein		Lus10036462 [exp]	265.1	0.6839

Compare expression of checked genes

Lus10041040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.