Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10120 1397 / 0 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 1102 / 0 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 988 / 0 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 974 / 0 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G43170 588 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) AT1G61580 588 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1) AT5G20830 166 / 1e-41 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT5G49190 164 / 5e-41 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 157 / 1e-38 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT3G43190 156 / 1e-38 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016657 [exp] 1091 / 0 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10038119 [exp] 982 / 0 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10008056 [exp] 872 / 0 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10006181 [exp] 678 / 0 AT1G43170 679 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) Lus10035786 [exp] 675 / 0 AT1G61580 683 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1) Lus10037360 [exp] 573 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1) Lus10022570 [exp] 466 / 2e-149 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10006186 [exp] 389 / 2e-124 AT4G10120 303 / 8e-96 Sucrose-phosphate synthase family protein (.1.2) Lus10006183 [exp] 329 / 4e-103 AT4G10120 202 / 1e-59 Sucrose-phosphate synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095500 [exp] 1489 / 0 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.001G317600 [exp] 1110 / 0 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.017G057800 [exp] 1105 / 0 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.018G025100 [exp] 1009 / 0 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 995 / 0 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 986 / 0 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 896 / 0 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.003G008300 [exp] 617 / 0 AT1G61580 626 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1) Potri.002G066200 [exp] 607 / 0 AT1G43170 701 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9) Potri.005G194500 [exp] 607 / 0 AT1G43170 686 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase CL0575 [flax] [poplar] EFTPs PF00297 [flax] [poplar] Ribosomal_L3 Ribosomal protein L3 CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10041041 pacid=23179743 polypeptide=Lus10041041 locus=Lus10041041.g ID=Lus10041041.BGIv1.0 annot-version=v1.0 ATGGCAGCAGGGAATGAGTGGATCCATGGGTATTTGGAGGCTATCTTGGATGCCGGGGGTGCTTCCTTGCGAAACCAAAAGAATGTTACAAATGTTAAAC TCATCAAGCTTTCCAAGTTCGAAGAAATGACGACCTCCTCAGAGCAACACGACGATGCTGATCATCCTCACACTACTACCACAGTCGCCACAGATAAGTT GTTTAGCCCCACAACCTACTTTGTTGAAGAGGTTATTAATAGCTTCGACGAGTCCGACCTCCACATGACTTGGGTCAAGGTCACTGCAACGAGGAATAGT CGCCAGCGTAGTAACAGGCTTGAAAACCTCTGCTGGCGCATTTGGCATCTCGCCCGTAGAAAGAAACAGATAGCATGGGATGGTGCTCAAAAGCTTGCAA CAACAAGGGCGGAGCGTGAACAAGGCCGCAATGATGTTGCAGATGATCTCTCTGAGCTTTCTGAAGGTGAAAAGGAACCTGGAGATTCCATTGTTCCTCC TGAATCTGCCAAAGAATCTGATTCTGCCTCCCAGTCCCAGATATGGACGGCTGAAGAAAAGCCTAGGCACCTTTACATTGTTCTAATCAGTTTGCACGGT CTGGTGCGTGGAGAAAACATGGAACTTGGAAGAGATTCTGATACTGGTGGCCAGGTCAAATACGCAGTCGAGCTAGCTCGAGCTCTGGCCAATACAAGTG GAATCTATCGTGTCGATCTCTTAACGAGACAGATCACCTCACCTGAGGTAGACTCCAGCTACGGCGAGCCGATTGAGATGCTCTCATATCCACAAGATGG CACCGGCAGTTGTGGAGCCTACATAATTCGTATCCCCTGTGGCCCTCCTGACAAGTATATTCCAAAAGAATCACTTTGGCCTTATGTACCTGAATTTGTC GACGGTGCACTGAACCACATAGTCAACATGGCAAGAGCTTTGGGAGAACAAGTCAATGGTGGGGTTGGGAAGCCAACTTGGCCCTATGTTATTCATGGCC ACTATGCCGATGCAGGAGAAGTCGCGGCTCATCTAGCCGGAGCCTTGGAGGTGCCAATGGTGCTAACTGGACACTCACTAGGGAGAAACAAGTTTGAGCA GCTGCTGAAGCAAGGGAGGCTTTCCAGAGAAGACATAGATGTGACTTACAACATTGTAAGGAGGATCCAGGCTGAAGAGTTTGCGCTGGACGCGGCTCAA ATGGTGGTCACGAGCACCCGACAAGAGATCGAAGAGCAATGGGGTCTGTATGATGGCTTTGATATCAAGCTGGAGAGGAAACTTAGAATCAGAAGACGAC GTGGAGTCAGTTGCATGGGTCGATACATACCAAGAATGGTGGTTATCCCTCCGGGAATGGACTTCAGCTATGTTACAACTCGAGATTCATCAGAAGATGA TCTGAAATCGTTGGTCGGTCCAGATAAAACTCCAAAAAAAGTGCACATTCCTCCAATATGGTCCGAGATAATGAGATTTTTTACCAATCCTCATAAGCCA ACTATACTGGCATTATCCCGTCCAGACCCGAAGAAAAATGTCACCACCTTGATCAAGGCCTTTGGGGAAAGCCAATCCCTTAGAGAACTAGCAAACTTGA CACTTATTCTTGGCAATAGAGATGACATCGAGGATATGTCCAATACCCCCTCAGCTGTACTTACCACTGTACTTAAGCTCATTGACAAGTATGATTTATA TGGTCAAGTAGCTTACCCCAAACACCACAAACAATCTCAAGTTCCGGATATCTATCGCCTGGCCGCTAAGACAAAGGGGGTTTTCGTCAATCCAGCTCTA GTTGAACCATTTGGTCTCACCCTCATCGAGGCAGCTGCATATGGTTTACCGATTGTAGCTACTGAAAATGGTGGACCCGTGGATATTCTGAAGGCTCTTA ACAACGGCATCCTAGTTGATCCTCATGATCATAAAGCTATAACAGAAGCACTGCTAAAGCTTCTAGCGGATAAAAACAGATGGAACGAATGTCGGAAAAA CGGTCTGAAAAACATCCACCATTTTTCATGGCCGGAGCATTGTCGTAATTATCTTAGCCACGTAGAGCACTGCAGGAACAACCATCACCCAAAGACTCAT CTTGAGATGACATACATGCCTCAAGAACCATTGAGTGAGTCTCTAAAAGAAGCTGAAGATCAGTCTTTGAGATTCTCCATAGAGGGAGATTTTTTCAAGT ACAGCGGTAGTGAGCTCGATGCAGAGACCAAGCACAAGAAGCTCATTGAAGCAATTATGTCAAACAGGAGTTGCAGTAGTGCTAACTACAGCCCCGGAAG AAGGCAAATGTTATTCGTGATAGCCGCTGATTGCTACGATTCTAACGGAAAACCCACGGGTCATATGCAAGACATCATCAAGAACACGCTAAAAGCTGCA GGTTTATTAATTCAGGGATCGAGCAAGGTTGGTTTTGTATTGTTGACCGGCTCGAGTTTAGCGGAGACAATGGAAATGTTAAGATCATGCTCAGTGAACA TAGGAGACTTTGATGCCATAGTGTGCAACAGTGGAGGTGAGATGTATTATCCATGGAGGGATATGGTGGCTGACACGGACTATGAAGCACACATGGAATA CAGGTGGCCTGGTGATAATATTAAGCCAATGGTGATTAAGCTAGCTAGGGTTGTTGATGATGACAAGGCTGATGATAACGTCGTTGGGGAGTTCGATGAA GCAGGAGGAGGTTCCAAATATTATTCTTACAGCATCAAACCAGGAGCTAAAATTCAAAATGTTGACAACCTACGGCAAAGGCTCCGAATGAGAGGTTTCA GATGCAATCTAGTCTACACCCAAGCAGCTACAAGGCTAAATGTAATTCCGTTATTCGCATCGAGAGTTCAAGCTATGAGATATCTTGCAGTTCGGTGGGG GATCGATCTTTCGAATGTGGTGGTTATTATGGGAGAACGAGGGGATACAGATTGCGAACAACTACTGGGTGGCCTTCACAAGACCCTTATTATAAGAGGC TCAGTCGAGCATGATAGTAAGAAGCTTCTTTGCGACCAAGGCAATCTGAAAAGAGAAGACTTATTAGTGGTTTTGGATGGCCCTAACATTCGCTTCGTAG ATGAGTGCTACGAAGCTCAACATATAACAGCTGCTCTAGAGGCGTTGGGAAATCAAGTCAAAGTGAAGGCAAAAGCATTGAGAGAAGTCGAAAGAGATGT TGGAGAAACACAAACCACAAGTGCTGCTTTAGCTGCTAGGTTCTTCGCAAGGTATTCCGCCGATCTCCGTCCTGTTCTACAATTTCCTCTGGTTTCTTCG TTTGTTCAGGCTGGTATCTCGGAAATGGCTCTCTTTTATCAAATTCCCTTAATGGGCATTTGTAAAGAAGTACCTAACGAGCCTGGGAGAATTGGCACAA CTGATTGTGCCATAGGCCTCTGGTCTGAGGGATACGTTTCACTTCAAGCCTGCCGATGCTTGAAGGCTTTTCCCAAGGATGATCCATCGAAGGAACCAAG GCTTACTGCTTTCCTGGGTTATAAGGCTGGAATGACCCACATTGTTAGGGAAGTTGAGAAGCCTGGGTCGAAGCTCCACAAGAAAGAGACATGTGAAGCT GTTACAATCATCGAGACTCCACCGTTGGTGGTTGTTGGAGTTGTTGGTTATGTCAAAACACCCAATGGCCTCCGCTCATTGAGCACTGTATGGGCCCAGC ATTTGAGCGAGGATGTCAAGAGGAGGTTCTATAAGCACTGGGCCAAGTCAAAGAAGAAGGCTTTCACCAAGTACTCCAAGAGGTTTGAGACCGATGAGGG CAAAAAGGACATTAATGCCCAGTTGGAGAAGCTGAAGAAGTATGCAACTTGCATCCGTGTCATTGCCCACACTCAGATTAGGAAGATGAAGGGGCTGAAG CAGAAGAAGGCTCACCTGATGGAGATTCAGGTCAACGGTGGTGATATTGCAAAGAAGGTTGACTTCGCCTACAGCTTCTTTGAGAAGCAGATTCCTATTG ATTCTGTGTTCCAGAAGGATGAGATGATCGACATCATTGGAGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTCACTCGTTGGGGTGTTACCCGCCTTCC CCGAAAGACCCATCGTGGTCTTCGCAAAGTTGCTTGTATTGGTGCATGGCATCCTGCTAGGGTTTCCTACACAGTTGCTAGGGCTGGACAGAACGGTTAC CATCACCGTACTGAAATGAACAAAAAGATCTACAAGCTTGGGAAGTCTGGACAGGATTCTCACTCTGCAATGACTGAATATGACAGGACTGAGAAGGATA TTACTCCTATCGGCGGGTTCCCTCATTATGGTGTGGTGAAAGAAGATTACATAATGATAAAGGGTTGCTGTGTTGGTCCCAAGAAGCGTGTGGTGACTTT GAGGCAGTCTCTGTTGAAGCAGACATCACGAACTGCTCTGGAACAGGTGAATCTCAAGTTCATCGACACTTCCTCCAAGTTTGGGCATGGCAGATTCCAG ACTACCGTGGAGAAGCTCAAGCACTATGGTCGCGTCAAGGCTTAG
AA sequence Show only first row Show all	>Lus10041041 pacid=23179743 polypeptide=Lus10041041 locus=Lus10041041.g ID=Lus10041041.BGIv1.0 annot-version=v1.0 MAAGNEWIHGYLEAILDAGGASLRNQKNVTNVKLIKLSKFEEMTTSSEQHDDADHPHTTTTVATDKLFSPTTYFVEEVINSFDESDLHMTWVKVTATRNS RQRSNRLENLCWRIWHLARRKKQIAWDGAQKLATTRAEREQGRNDVADDLSELSEGEKEPGDSIVPPESAKESDSASQSQIWTAEEKPRHLYIVLISLHG LVRGENMELGRDSDTGGQVKYAVELARALANTSGIYRVDLLTRQITSPEVDSSYGEPIEMLSYPQDGTGSCGAYIIRIPCGPPDKYIPKESLWPYVPEFV DGALNHIVNMARALGEQVNGGVGKPTWPYVIHGHYADAGEVAAHLAGALEVPMVLTGHSLGRNKFEQLLKQGRLSREDIDVTYNIVRRIQAEEFALDAAQ MVVTSTRQEIEEQWGLYDGFDIKLERKLRIRRRRGVSCMGRYIPRMVVIPPGMDFSYVTTRDSSEDDLKSLVGPDKTPKKVHIPPIWSEIMRFFTNPHKP TILALSRPDPKKNVTTLIKAFGESQSLRELANLTLILGNRDDIEDMSNTPSAVLTTVLKLIDKYDLYGQVAYPKHHKQSQVPDIYRLAAKTKGVFVNPAL VEPFGLTLIEAAAYGLPIVATENGGPVDILKALNNGILVDPHDHKAITEALLKLLADKNRWNECRKNGLKNIHHFSWPEHCRNYLSHVEHCRNNHHPKTH LEMTYMPQEPLSESLKEAEDQSLRFSIEGDFFKYSGSELDAETKHKKLIEAIMSNRSCSSANYSPGRRQMLFVIAADCYDSNGKPTGHMQDIIKNTLKAA GLLIQGSSKVGFVLLTGSSLAETMEMLRSCSVNIGDFDAIVCNSGGEMYYPWRDMVADTDYEAHMEYRWPGDNIKPMVIKLARVVDDDKADDNVVGEFDE AGGGSKYYSYSIKPGAKIQNVDNLRQRLRMRGFRCNLVYTQAATRLNVIPLFASRVQAMRYLAVRWGIDLSNVVVIMGERGDTDCEQLLGGLHKTLIIRG SVEHDSKKLLCDQGNLKREDLLVVLDGPNIRFVDECYEAQHITAALEALGNQVKVKAKALREVERDVGETQTTSAALAARFFARYSADLRPVLQFPLVSS FVQAGISEMALFYQIPLMGICKEVPNEPGRIGTTDCAIGLWSEGYVSLQACRCLKAFPKDDPSKEPRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEA VTIIETPPLVVVGVVGYVKTPNGLRSLSTVWAQHLSEDVKRRFYKHWAKSKKKAFTKYSKRFETDEGKKDINAQLEKLKKYATCIRVIAHTQIRKMKGLK QKKAHLMEIQVNGGDIAKKVDFAYSFFEKQIPIDSVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGY HHRTEMNKKIYKLGKSGQDSHSAMTEYDRTEKDITPIGGFPHYGVVKEDYIMIKGCCVGPKKRVVTLRQSLLKQTSRTALEQVNLKFIDTSSKFGHGRFQ TTVEKLKHYGRVKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	0	1
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	1.7	0.8071
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	4.9	0.7371
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	6.0	0.7781
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	6.3	0.7809
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	6.5	0.7965
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	10.4	0.7465
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	11.4	0.7360
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	12.8	0.7916
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	13.3	0.7534
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	13.6	0.7871

Compare expression of checked genes

Lus10041041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.