Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 373 / 5e-129 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT3G15870 344 / 7e-118 Fatty acid desaturase family protein (.1) AT1G06080 342 / 1e-117 ADS1 delta 9 desaturase 1 (.1) AT2G31360 332 / 5e-114 ADS2 16:0delta9 desaturase 2 (.1) AT1G06100 328 / 3e-112 Fatty acid desaturase family protein (.1) AT1G06120 317 / 6e-108 Fatty acid desaturase family protein (.1) AT1G06090 317 / 6e-108 Fatty acid desaturase family protein (.1) AT1G06350 310 / 4e-105 Fatty acid desaturase family protein (.1) AT1G06360 306 / 8e-104 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041043 [exp] 610 / 0 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 603 / 0 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 473 / 2e-169 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 467 / 1e-166 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 388 / 1e-135 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 379 / 1e-132 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 370 / 2e-127 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 355 / 1e-121 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 319 / 6e-109 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 375 / 2e-129 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 372 / 1e-128 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 372 / 2e-128 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10041042 pacid=23179524 polypeptide=Lus10041042 locus=Lus10041042.g ID=Lus10041042.BGIv1.0 annot-version=v1.0 ATGGCAGTCGGAGAGGCAATGGGAGAGATTCTTAAGGGAAACAAAAATAGCAACGGCGGAATGGTGACAACAAACAATTTGCCGCTGGTCGATGTATCTG TAGCCACGGCGACGAATAAGGAGGAGTCAGTTGTCGTAGGAGGATCGACGACGACGACGACGAGGAAACTGAACGCGTACGACAAAAAGGCGATAGTGGG GATCGCAGGGACCCACTTGCTGGCTCTGTTTGCGCCGTTTTGCTTCAGCTGGGATGCGTTTTGGCTCGCGGTGTGTCTTTACCATGTAATGGGACTCTTC GGCATTTGCTTCTCGTACCATAGAAATCTAGCCCACCACAGCTTCAAGGTCCCCAAATGGCTCGAGTATTTCTGTGCTTACTGCGGCGCCCAAGCTCTCC AGGGTGATCCGATGACTTGGGTAAGCAATCACAGATTCCATCATCAATATGTAGATACAGAAAGAGACCCACATAGCCCAATTGAAGGCTTCTGGCATAG TCATATGAGTTGGATCTTCGATTCCTCTTCCATTCGAGACAAGTGTGGGAAAAGAGACAATGTCGGAGACTTGAAAAGCCAAGCATTCTACAGGTGGCTT CGCAGGAGCTACGTGTACCACGTAATGGGTTTCGCTGCACTGCTCTACATAGTTGGTGGATTTCCCTATTTGGTCTGGGGAATTGGAGTAAGGACGGTAT GTCTTCATCACTCGACATTCCTTGTTAACTCTGCTGCTCATGTTTGGGGATCTCAGCCTTGGAAAACCAATGATCTCTCAAGGAACAATTGGTGGGTTGC TATATTGACATTTGGGGAAGGTTGGCACAACAATCACCATGCCTTCAAATACTCGGCGAGGCAAGGGCTAGAATGGTGGCAAATAGATGTGACTTGGTAT GTGCTCAACTTCCTTCAAGCAGTGGGGTTAGCCTATGACGTCAAGGTCCCAAGTCAGTCCCAAATGCACAAGTTGCAGGCTTTGAAGACCGAGTAA
AA sequence Show only first row Show all	>Lus10041042 pacid=23179524 polypeptide=Lus10041042 locus=Lus10041042.g ID=Lus10041042.BGIv1.0 annot-version=v1.0 MAVGEAMGEILKGNKNSNGGMVTTNNLPLVDVSVATATNKEESVVVGGSTTTTTRKLNAYDKKAIVGIAGTHLLALFAPFCFSWDAFWLAVCLYHVMGLF GICFSYHRNLAHHSFKVPKWLEYFCAYCGAQALQGDPMTWVSNHRFHHQYVDTERDPHSPIEGFWHSHMSWIFDSSSIRDKCGKRDNVGDLKSQAFYRWL RRSYVYHVMGFAALLYIVGGFPYLVWGIGVRTVCLHHSTFLVNSAAHVWGSQPWKTNDLSRNNWWVAILTFGEGWHNNHHAFKYSARQGLEWWQIDVTWY VLNFLQAVGLAYDVKVPSQSQMHKLQALKTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	2.0	0.9756
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10036062 [exp]	3.5	0.9647
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	4.1	0.9521
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	4.2	0.9695
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	6.0	0.9638
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	7.0	0.9619
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	7.7	0.9598
AT3G24750			unknown protein		Lus10025939 [exp]	8.5	0.9620
AT3G05390			unknown protein		Lus10029907 [exp]	9.2	0.9622
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	9.4	0.9589

Compare expression of checked genes

Lus10041042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.