Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 156 / 8e-46 Protein of unknown function (DUF506) (.1) AT2G20670 143 / 1e-40 Protein of unknown function (DUF506) (.1) AT4G14620 106 / 2e-26 Protein of unknown function (DUF506) (.1) AT3G07350 105 / 3e-26 Protein of unknown function (DUF506) (.1) AT3G25240 100 / 8e-25 Protein of unknown function (DUF506) (.1) AT2G39650 99 / 5e-24 Protein of unknown function (DUF506) (.1) AT1G62420 97 / 2e-23 Protein of unknown function (DUF506) (.1) AT2G38820 96 / 6e-23 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT1G12030 95 / 2e-22 Protein of unknown function (DUF506) (.1) AT3G22970 87 / 7e-20 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006177 [exp] 530 / 0 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 140 / 2e-39 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 140 / 3e-39 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 137 / 4e-38 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 123 / 5e-33 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 121 / 3e-32 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10006634 [exp] 105 / 1e-25 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 104 / 2e-25 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 105 / 3e-25 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074400 [exp] 259 / 2e-86 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 258 / 1e-85 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 143 / 8e-41 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 143 / 1e-40 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 139 / 3e-39 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 137 / 3e-38 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.005G216900 [exp] 103 / 4e-25 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 100 / 2e-24 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.005G058200 [exp] 99 / 2e-24 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 100 / 3e-24 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10041046 pacid=23179520 polypeptide=Lus10041046 locus=Lus10041046.g ID=Lus10041046.BGIv1.0 annot-version=v1.0 ATGGGTCGCCTTCAGATGAACATTCTGAACCCTCCTGTTGAGGAAGGATTCTTCAAGGCTCTTGATCTTCATCATCATCATCAACTCACCTCATCTAATA ATCTGGACATTGTTGTTAACAATTTCCATAGCCATTCTAGTAATGGAAATGACGAGAATGGCAAAGGGTATTTGCAAGCTGCCGATTTGGAGGATTGGGA CGCCGCCGCCGACGATGGCCATTCGCCGGAGGACGACCCCGACAGTGTTCTGTTCTGGGAATCCCAGGAGTCCTTGCTTCAGGAGGTTCTAGAACGCCAT AGCTCATCAAGTTTAAAGCTGAGGCAAGAAGTTGGAAGGATCATAGGGCTAGCAAAGCACACTGATTTCTGCAGCTGTCTTAATCCGGACACCCAAGGAT GCACCAACTGCTTGCGACACAAAGTAGTCGACATGCTTTCCCAAAAACGATTCGATGCAACTATCTGTACATCACAATGGAAGAACACCAGAGACTTCCC AGGAGGTAAGCACGAGTATATTGAGTTGATCGCGAGCACAAGCACGAAAAAGAAGAAGATACCGTATCTGGTGGAGCTGGAGTTAAAGGATCAATTCGAG ATAGCAAAATCGTGTGAACAGTACAGAAGGATGGTATCCCAGCTGCCAGAATACTACATCGGAAAACCAGACTGCCTCAACGCCATTGTACGAATTCTCT GCGAAGCGGCCAAGAGGTCGATGAAGGAGCAGAAGATCCATATGGGACCTTGGAGGAAGAGGAGCTTCATGCAGATGAAATGGTCGATTTCTTCACCCAA ACCGGAGGATTCTCCTCTTGCCAGTAGGAAGCTCCCGCTTCCAATGCCAGGCTTGGAATCCTCTCCAGTTGCAGCTGTTGAAATCATATAG
AA sequence Show only first row Show all	>Lus10041046 pacid=23179520 polypeptide=Lus10041046 locus=Lus10041046.g ID=Lus10041046.BGIv1.0 annot-version=v1.0 MGRLQMNILNPPVEEGFFKALDLHHHHQLTSSNNLDIVVNNFHSHSSNGNDENGKGYLQAADLEDWDAAADDGHSPEDDPDSVLFWESQESLLQEVLERH SSSSLKLRQEVGRIIGLAKHTDFCSCLNPDTQGCTNCLRHKVVDMLSQKRFDATICTSQWKNTRDFPGGKHEYIELIASTSTKKKKIPYLVELELKDQFE IAKSCEQYRRMVSQLPEYYIGKPDCLNAIVRILCEAAKRSMKEQKIHMGPWRKRSFMQMKWSISSPKPEDSPLASRKLPLPMPGLESSPVAAVEII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	1.0	0.9765
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	2.0	0.9425
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	4.6	0.9066
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	5.2	0.9241
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	6.3	0.9141
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	6.5	0.8752
AT5G55570			unknown protein		Lus10008950 [exp]	8.5	0.9154
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	8.5	0.8904
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	8.6	0.8111
					Lus10017606 [exp]	8.8	0.8938

Compare expression of checked genes

Lus10041046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.