Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10030 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1) AT3G52570 176 / 8e-52 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006176 [exp] 392 / 2e-132 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10016992 [exp] 169 / 1e-47 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 161 / 1e-44 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10022691 [exp] 100 / 8e-25 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10014220 [exp] 86 / 2e-18 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1) Lus10022689 [exp] 73 / 5e-15 AT3G52570 182 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1) Lus10014222 [exp] 44 / 1e-05 AT3G52570 130 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074600 [exp] 498 / 3e-177 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076550 [exp] 124 / 4e-33 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G077066 [exp] 82 / 2e-18 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076601 [exp] 56 / 2e-09 AT3G52570 181 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041047 pacid=23179755 polypeptide=Lus10041047 locus=Lus10041047.g ID=Lus10041047.BGIv1.0 annot-version=v1.0 ATGTCGTCGGTGATCCCCACATTCACAGCTTCCGGTAAAAGCGGAACCTTGTTGCATTCCGTCCAAAAGACTCCTGGTTCGAATTCCGCAGCTTCCATTT CTCAAATTTCCTTGCGGCAGGCTCAGAATGAAGCATTCGGAATCTCCCGACTATCCCTGAGATGTTCGAGTCGAATGGTTAAAGACCGAACGGTGCGAAT GGCATTGGTTGATGAGAGAAAGCTCGCTCGCAACACTAGATTGGTAGAGCCGTCGGGAGTTTTGGTAGAATGGAGTTCATCAATGGACAAATCGGTAGCT GATCCTCCGACAGCTGTACTTCTGCATGGGATTCTTGGTAGCCGAAAGAATTGGGGGTCTTTTGCTAAACGGCTTGCTCAAGAGTTCCCAATGTGGCAGT TCCTTTTAGTAGACTTGCGATGCCATGGCGATTCTGCATCAGTCAGCAGGAGGGGCCCGCACTCTGTCGCTTCAACTGCTTTAGATGTCTTAAAGCTGGT AGGACATCTTAGAATAACACCCAGGGTCTTAATTGGTCACAGCTTTGGAGGAAAAGTTGTTCTGAGCATGGTGGATCAGGCTGCCAAACCTCTTGCAAGA CCAATTAGAGTGTGGGTTTTAGATGCTACTCCTGGAAAGGTCCGGGCAGGGGGTGATGGAGAAGATCATCCTTTTGAACTTATATCCTTATTAAGAAGAT TGCCGGAAGAGGTCACTTCAAAAAGAGAAGTTGTAAGTGCACTTCTCGGAGAGGGATTTTCTAAAGATGTTGCACAGTGGGTAGTAACTAATCTTCGACC AAGTGGACCTCCATCATCCCCGTTGTCAAAGTTTTCATGGACGTTTGATCTTGATGGGATATCAGAAATGTACAGTTCCTATGAAGAAGCTAATCTATGG AAATTCGTGGATAACTTGCCTAGAGGAGTACATCTTAATTTTTTGAAAGCGGAGAGGAGCTTGCACAGATGGGCTTTGGAAGATGTTCAAAGAATTCATG CTGCAGAAGATATTGCTTCAGAGGAAGGAGGTGGAGTAGAAATGCACGTCCTCGAAGATGCAGGCCACTGGGTACATACTGATAATCCAGATGGGCTCTT CAGAATTCTCTCGCCTTCATTCCAGGCATTCAAAACCTGA
AA sequence Show only first row Show all	>Lus10041047 pacid=23179755 polypeptide=Lus10041047 locus=Lus10041047.g ID=Lus10041047.BGIv1.0 annot-version=v1.0 MSSVIPTFTASGKSGTLLHSVQKTPGSNSAASISQISLRQAQNEAFGISRLSLRCSSRMVKDRTVRMALVDERKLARNTRLVEPSGVLVEWSSSMDKSVA DPPTAVLLHGILGSRKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASVSRRGPHSVASTALDVLKLVGHLRITPRVLIGHSFGGKVVLSMVDQAAKPLAR PIRVWVLDATPGKVRAGGDGEDHPFELISLLRRLPEEVTSKREVVSALLGEGFSKDVAQWVVTNLRPSGPPSSPLSKFSWTFDLDGISEMYSSYEEANLW KFVDNLPRGVHLNFLKAERSLHRWALEDVQRIHAAEDIASEEGGGVEMHVLEDAGHWVHTDNPDGLFRILSPSFQAFKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10041047 [exp]	0	1
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	2.0	0.7948
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	2.0	0.8368
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	11.6	0.7871
AT1G36320			unknown protein		Lus10033109 [exp]	17.6	0.7827
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	24.5	0.7831
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	29.2	0.7612
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	29.8	0.7802
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	29.8	0.7641
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	33.0	0.7733
AT3G52740			unknown protein		Lus10022717 [exp]	35.1	0.7277

Compare expression of checked genes

Lus10041047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.